RNA id: TU2438699



Basic Information


Item Value
RNA id TU2438699
length 454
lncRNA type intronic
GC content 0.37
exon number 4
gene id G2132794
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 35774336 ~ 35775350 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggtttaaaaacatatacttctgtgtattgattttaagaaagccattgaggtttatggttaggtacattggtgtttagggttaggtacattggtgtttagggttaggtacattggtgtttatggttaggtacattggtgtttagggttaggtacattggtgtttatggttaggtacattggtgtttatggttaggtacattggtgtttagggttaggtacattggtgtttatggttaggtacattggtgtacattggtgtttatggttaggtacattggtgtttatggttaggtacattggtgtttatggttaggtacattggtgtttatggttaggtacattgatgttatggttaggtacattggtgtttatggtgaggtacattgatgtttatggttaggtacagtcgtgcaacgattgtgcttttttccgcaaatgtgcttttgttaaatcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2438697 lncRNA downstream 408 35773598 ~ 35773928 (-) True G2132793
TU2438689 lncRNA downstream 2728 35771108 ~ 35771608 (-) True G2132788
TU2438688 lncRNA downstream 4104 35770018 ~ 35770232 (-) True G2132787
TU2438686 lncRNA downstream 7195 35766796 ~ 35767141 (-) True G2132785
TU2438680 lncRNA downstream 16277 35757338 ~ 35758059 (-) True G2132779
TU2438703 lncRNA upstream 3003 35778353 ~ 35778606 (-) True G2132798
TU2438644 lncRNA upstream 6820 35782170 ~ 35782661 (-) True tfr1a
TU2438717 lncRNA upstream 44425 35819775 ~ 35820085 (-) True G2132812
TU2438730 lncRNA upstream 69016 35844366 ~ 35844638 (-) True G2132824
TU2438731 lncRNA upstream 70690 35846040 ~ 35846366 (-) True G2132825
XM_036966286.1 mRNA downstream 10767 35663916 ~ 35763569 (-) False LOC110508241
XM_036966282.1 mRNA downstream 37220 35663916 ~ 35737116 (-) False LOC110508241
XM_036966284.1 mRNA downstream 52951 35663916 ~ 35721385 (-) False LOC110508241
XM_021590047.2 mRNA downstream 198355 35516740 ~ 35575981 (-) False LOC110509088
LOC110508240 mRNA downstream 345037 35391006 ~ 35429299 (-) True LOC110508240
XM_021590052.2 mRNA upstream 6799 35782149 ~ 35812072 (-) False tfr1a
XM_021590049.2 mRNA upstream 6799 35782149 ~ 35813145 (-) False tfr1a
XM_021590050.2 mRNA upstream 6799 35782149 ~ 35813447 (-) False tfr1a
XM_036966684.1 mRNA upstream 58633 35833983 ~ 35841991 (-) False LOC110509089
XM_036966685.1 mRNA upstream 58633 35833983 ~ 35842022 (-) True LOC110509089
TU2437347 other downstream 1256207 34516522 ~ 34518129 (-) False G2131641
TU2437349 other downstream 1256207 34516522 ~ 34518129 (-) True G2131641
TU2437325 other downstream 1288160 34485869 ~ 34486176 (-) True G2131621
TU2436347 other downstream 1716066 34044690 ~ 34058270 (-) True LOC110509052
TU2436338 other downstream 1731771 34041569 ~ 34042565 (-) False LOC110509052
TU2438804 other upstream 230139 36005489 ~ 36017832 (-) False lyrm4
TU2438803 other upstream 240712 36016062 ~ 36017832 (-) True lyrm4
TU2438849 other upstream 248430 36023780 ~ 36025201 (-) False LOC118944844
TU2438850 other upstream 248440 36023790 ~ 36025201 (-) True LOC118944844
TU2438948 other upstream 448863 36224213 ~ 36225379 (-) True G2132971

Expression Profile