RNA id: TU2438733



Basic Information


Item Value
RNA id TU2438733
length 286
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G2132827
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 35848238 ~ 35848523 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCACATGTGATCCATGAGAGAAGCACCACACACTGTCCATGTGTTTTCTGGAGGGATCCCATCTTATGTAGAGGCCAAAAAGAAACTGAATGAACACCTATTGAGTTTGATGGGCAGCGAGTAGCATAAACACTTATGTGAACAATGCTTGGTGTAAAAGCTATTCCCAAAGTAAAAAAGTGTGTAAACAGAGCTATGGAGGGCACATACCAATCCACTGCAATTTGTCAGTCAAAAGAGGGAAAAGCTAATTATTATATCTGACACCTTAAGAGACAATTCCCCC

Function


GO: NA

KEGG:

id description

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2438731 lncRNA downstream 1872 35846040 ~ 35846366 (-) True G2132825
TU2438730 lncRNA downstream 3600 35844366 ~ 35844638 (-) True G2132824
TU2438717 lncRNA downstream 28153 35819775 ~ 35820085 (-) True G2132812
TU2438644 lncRNA downstream 65577 35782170 ~ 35782661 (-) True tfr1a
TU2438703 lncRNA downstream 69632 35778353 ~ 35778606 (-) True G2132798
TU2438696 lncRNA upstream 1959 35850482 ~ 35852434 (-) True G2132792
TU2438748 lncRNA upstream 17325 35865848 ~ 35871224 (-) False LOC110509091
TU2438742 lncRNA upstream 17958 35866481 ~ 35871109 (-) False LOC110509091
TU2438750 lncRNA upstream 17958 35866481 ~ 35871109 (-) False LOC110509091
TU2438754 lncRNA upstream 17958 35866481 ~ 35871109 (-) False LOC110509091
XM_036966685.1 mRNA downstream 6216 35833983 ~ 35842022 (-) True LOC110509089
XM_036966684.1 mRNA downstream 6247 35833983 ~ 35841991 (-) False LOC110509089
XM_021590050.2 mRNA downstream 34791 35782149 ~ 35813447 (-) False tfr1a
XM_021590049.2 mRNA downstream 35093 35782149 ~ 35813145 (-) False tfr1a
XM_021590052.2 mRNA downstream 36166 35782149 ~ 35812072 (-) False tfr1a
XM_036966073.1 mRNA upstream 21633 35870156 ~ 35925783 (-) False LOC110509091
XM_021590059.2 mRNA upstream 154330 36002853 ~ 36013047 (-) False rpp40
XM_021590060.2 mRNA upstream 154330 36002853 ~ 36013047 (-) True rpp40
XM_036966844.1 mRNA upstream 167563 36016086 ~ 36017873 (-) False lyrm4
XM_036966480.1 mRNA upstream 175191 36023714 ~ 36025735 (-) False LOC118944844
TU2437347 other downstream 1330109 34516522 ~ 34518129 (-) False G2131641
TU2437349 other downstream 1330109 34516522 ~ 34518129 (-) True G2131641
TU2437325 other downstream 1362062 34485869 ~ 34486176 (-) True G2131621
TU2436347 other downstream 1789968 34044690 ~ 34058270 (-) True LOC110509052
TU2436338 other downstream 1805673 34041569 ~ 34042565 (-) False LOC110509052
TU2438804 other upstream 156966 36005489 ~ 36017832 (-) False lyrm4
TU2438803 other upstream 167539 36016062 ~ 36017832 (-) True lyrm4
TU2438849 other upstream 175257 36023780 ~ 36025201 (-) False LOC118944844
TU2438850 other upstream 175267 36023790 ~ 36025201 (-) True LOC118944844
TU2438948 other upstream 375690 36224213 ~ 36225379 (-) True G2132971

Expression Profile