RNA id: TCONS_00055723


Basic Information

Item Value
RNA id TCONS_00055723
length 578
RNA type mRNA
GC content 0.41
exon number 5
gene id XLOC_028749
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 20176143 ~ 20177868 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCTGACCAAAAAAACTTTACACCCGCGTCGACACAATAGTATTCGACCGTTTTTATGGCTCACCGTAACAATACACAAACCGACGTCAAACACAATCATTCAGtTTCTTTCACAGATATGCCTTCGGAAACGGATAAGAATTACATAAGCGTATTTAAACGCAAATCACCTTTAACATTATCCCCTAAGCGCAAGTACGCTGTGGCAGTCGTTTCCCCCCTGCAAAAACACGACAGCTGTGAAACTGTCATTGCAGATGGTCGATCTGGATCAACATCCGCTGCTCATGCAGTCAGATTGCATGAACATGCAAGGCTGCAAAGATCAACTTGTTTTAAGCCTTTCTCTTTTGATGCACGTGATGCAGCAAGAAAAGTTGAGCGTGAGAGGAAACTGAAAGAAATGCGCCAGATACAAGAACAAGTTTGGtgttcaagTTTTAGAGCTCGTCCAGTGAGAAGATACAAACCTCTGAGTAAGCCATCCGTATAGTCCGAGACCTGTTCCCAGAACTGTCAATAATGTGTAgaatttgtcttttttaaatgtttttttttaataaaatactcTCTTTTTA

Function

GO:

id name namespace
GO:0001840 neural plate development biological_process
GO:0005634 nucleus cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050913-2 Acts upstream of or within neural plate development. Located in nucleus. Is expressed in shield.

Ensembl:

ensembl_id ENSDART00000003621

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055720 lncRNA downstream 48198 20126188 ~ 20127945 (-) False XLOC_028747
TCONS_00058201 lncRNA downstream 52085 20122913 ~ 20124058 (-) True XLOC_028746
TCONS_00058200 lncRNA downstream 128259 20044867 ~ 20047884 (-) False XLOC_028741
TCONS_00058199 lncRNA downstream 128259 20044867 ~ 20047884 (-) True XLOC_028741
TCONS_00058198 lncRNA downstream 128741 20044867 ~ 20047402 (-) False XLOC_028741
TCONS_00058202 lncRNA upstream 1414376 21592244 ~ 21628998 (-) True XLOC_028761
TCONS_00058203 lncRNA upstream 1456144 21634012 ~ 21647992 (-) False XLOC_028762
TCONS_00055746 lncRNA upstream 1459856 21637724 ~ 21643055 (-) False XLOC_028762
TCONS_00055748 lncRNA upstream 1465017 21642885 ~ 21647587 (-) False XLOC_028762
TCONS_00055747 lncRNA upstream 1465017 21642885 ~ 21647587 (-) True XLOC_028762
TCONS_00055722 mRNA downstream 20058 20141191 ~ 20156085 (-) True XLOC_028748
TCONS_00055719 mRNA downstream 40224 20124863 ~ 20135919 (-) False XLOC_028747
TCONS_00055721 mRNA downstream 40737 20126435 ~ 20135406 (-) True XLOC_028747
TCONS_00055717 mRNA downstream 57675 20110921 ~ 20118468 (-) False XLOC_028745
TCONS_00055718 mRNA downstream 60573 20112260 ~ 20115570 (-) True XLOC_028745
TCONS_00055725 mRNA upstream 826 20178694 ~ 20181964 (-) True XLOC_028750
TCONS_00055726 mRNA upstream 20426 20198294 ~ 20208166 (-) False XLOC_028751
TCONS_00055727 mRNA upstream 20628 20198496 ~ 20222182 (-) True XLOC_028751
TCONS_00055728 mRNA upstream 46231 20224099 ~ 20235904 (-) False XLOC_028752
TCONS_00055729 mRNA upstream 46249 20224117 ~ 20235904 (-) False XLOC_028752
TCONS_00055714 other downstream 112909 20049324 ~ 20063234 (-) True XLOC_028742
TCONS_00055699 other downstream 1128588 19047466 ~ 19047555 (-) True XLOC_028730
TCONS_00055684 other downstream 1521882 18654155 ~ 18654261 (-) True XLOC_028720
TCONS_00055683 other downstream 1522902 18653148 ~ 18653241 (-) True XLOC_028719
TCONS_00055676 other downstream 1569605 18597660 ~ 18606538 (-) False XLOC_028717
TCONS_00055737 other upstream 218181 20396049 ~ 20396170 (-) True XLOC_028756
TCONS_00055751 other upstream 1473803 21651671 ~ 21652632 (-) True XLOC_028763
TCONS_00055755 other upstream 2058490 22236358 ~ 22237294 (-) True XLOC_028767
TCONS_00055773 other upstream 3048865 23226733 ~ 23226849 (-) True XLOC_028779
TCONS_00055774 other upstream 3241452 23419320 ~ 23419455 (-) True XLOC_028780

Expression Profile

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