RNA id: TU2438955


Basic Information

Item Value
RNA id TU2438955
length 547
lncRNA type sense_over
GC content 0.39
exon number 2
gene id G2132978
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 36234468 ~ 36243185 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGAAGCTATATAAacaagtgctgacaggcaactagacagacaAGAACCCACCAATACCctaggaaaatggctacctaaatatggtccccaaccagagacaacaataaacagctacctctgattgggaaccatatcaggccaccatagacctacatatacctagacttacaaaaacgaacatacccaccctagtcacaccctgacctaaccaaaatgataactaaggtcagggtgtgacagagtggttaaaacatgctaataatggtcctctgagttTATCAAAATAAGTTttgtatacctccactggtatgccatccagccctggagttctcagcctttaattgcatcaagaagtccccctctgtaatttggccttcacatgaggcTTTCTGTACaaatgttaattttacattattaataggaAGAAAATCCATACAACTAACTTTGGTTAGTGAAGATGGAAGAGACTGAAACGAAAACTGCATTTGTAGCAAGTTTCAATAAAAGAAATCTGTTGAAGATTAAATGATTTGGtgcatattccat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2438946 lncRNA downstream 37036 36196849 ~ 36197432 (-) True G2132969
TU2438969 lncRNA downstream 76180 36157228 ~ 36158288 (-) False G2132992
TU2438971 lncRNA downstream 76679 36157228 ~ 36157789 (-) True G2132992
TU2438875 lncRNA downstream 156765 36077476 ~ 36077703 (-) True G2132934
TU2438864 lncRNA downstream 192642 36041534 ~ 36041826 (-) True G2132923
TU2438985 lncRNA upstream 7191 36250376 ~ 36255942 (-) True G2133005
TU2438986 lncRNA upstream 14552 36257737 ~ 36258004 (-) True G2133006
TU2438989 lncRNA upstream 24059 36267244 ~ 36267598 (-) True G2133009
TU2439007 lncRNA upstream 69584 36312769 ~ 36313075 (-) True G2133027
TU2439030 lncRNA upstream 95123 36338308 ~ 36338554 (-) True G2133048
XM_036966204.1 mRNA downstream 2308 36230055 ~ 36232160 (-) False LOC118944824
XM_036966205.1 mRNA downstream 2308 36230518 ~ 36232160 (-) True LOC118944824
XM_036966173.1 mRNA downstream 15794 36192769 ~ 36218674 (-) False fastk
XM_021590066.2 mRNA downstream 15794 36197798 ~ 36218674 (-) True fastk
XM_021590064.2 mRNA downstream 169896 36053418 ~ 36064572 (-) True LOC110509100
XM_021590068.2 mRNA upstream 476 36243661 ~ 36245981 (-) True LOC110509104
XM_036967106.1 mRNA upstream 95900 36339085 ~ 36391015 (-) False LOC110508243
XM_036967107.1 mRNA upstream 106212 36349397 ~ 36391023 (-) True LOC110508243
XM_036967108.1 mRNA upstream 148089 36391274 ~ 36398759 (-) False LOC118944889
XM_036966235.1 mRNA upstream 159384 36402569 ~ 36419771 (-) False faim2a
TU2438948 other downstream 9089 36224213 ~ 36225379 (-) True G2132971
TU2438849 other downstream 209267 36023780 ~ 36025201 (-) False LOC118944844
TU2438850 other downstream 209267 36023790 ~ 36025201 (-) True LOC118944844
TU2438804 other downstream 216636 36005489 ~ 36017832 (-) False lyrm4
TU2438803 other downstream 216636 36016062 ~ 36017832 (-) True lyrm4
TU2438987 other upstream 19817 36263002 ~ 36263330 (-) True G2133007
TU2439020 other upstream 313315 36556500 ~ 36557453 (-) True LOC110509111
TU2440638 other upstream 1523533 37766718 ~ 37939843 (-) True LOC110509127
TU2440825 other upstream 1884944 38128129 ~ 38130407 (-) True G2134625
TU2441345 other upstream 2276386 38519571 ~ 38526920 (-) True G2135034

Expression Profile