RNA id: TU2438943


Basic Information

Item Value
RNA id TU2438943
length 5317
RNA type TUCP
GC content 0.41
exon number 4
gene id G2132966
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 36235515 ~ 36249775 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATACTCAAATGTGCCTGTGGTCGAACAATTACTTTGCTGGCTATGTGTACTCTTCTGGTCCGTTTGCTTTTGCTCCTCACCCTCAGATTACGAttataatgtatatttttttacctttggaaagtctgttaagaacattcttatttacaatgacagcctaccataCCAGACTGTTATATTGAACGTGAGGATGCTCTCCTCCAAGCTGCTGTACACCCTCTCCAGAACATCCTGGCTGACCCCAAGCCCCTTAAAATTTCCTGATTTAAGAACAGATATTGGCAGGCTATAATTTTTTGGGGCATTTTCTGTAAAACTCAGCTTACCAATGTGTCCCTAAACACTCAACCACCTCCACCGGTTGGGACATTGGTAAGTTTTTGCCATtgatgatcagctcctttgtcttttcCACATTGATGTGGAGGGCACTTAACCAGCACCAGTCTTGAAGGTTGTTGGTCTGTTTAAAATAACTATCCCCATCTGATGTAgcatcttcttttttttttttttaaagagtcctACCAGAGCCATGTCATCCGCGTACTTAAAAAGGCTCACATTGTTTCCTATGATTTTCCTCTCGTTAGTGTAGATAGAGAACAACAACGGTgaaagcacacacccctggggtgCCCCTGTGTTCAGGGCCAGTTAATCAGAGAGGGCCCCGTTCATGAGGACCCTCTGGGCGGTCCAGTAATTGTTTCAGCCGTGTGTATTTGTATTGAAAGCTGAGCTAAAATCCATACATTTAAATGTGTGCATATGATTTTGCATGTTGAAGGTAACTAGCCACCATGTTCACCAAGGTCAGTGTAGCATCCTCAGTCTCCCTCCGTGCCTTACAGGCAAACTGTAACGGGTCCAGTTGATCTGCTATGGAAAGGGTAAGGAAAGGTGCTTACTAACAACCCTTTCCATGCATTTGGCAAAAAGGGGCGTGAGGGCCAAAGGTCAAAGGTGATTTGGCCACTGACATCTTAGGCACCGGTACAATGGTCGACACCTTCCAGGATTTTGGCACTGTACAGGTGCTCAGCAGGAGTTGAAACAGTCGTGTGTGAACGCCTTTGAGCTGGTCGGCGCAGACCTTCAGTTCTGGGCACGGTGCTTTGTGTGGCTTAATATTTGACAAGCATGAGGCCACCTCGTTCTCTTATCTGGACATACTctcacatttgtttacattcgtCTTTAAGAATCAACAGTATCAAATCTTCCATAAGAACAGTCTGCCATATTATTGTTTTCTCTTCCCATGCTTGTTTTGGATTGCCTGTATAGAACCTCTGCTCCACTTCATCCTTtctatacagtggcttgcgaaagtagtCACCCCGCTtgttgtttttcctattttgttgcttttaaacctggaattaaaatgggtttgtatcatttgatttccacaacatgtctaccactttgaagatgaaaaaaataatttttattgtgaaacaaataagAGACAAAAACAGAGGTCAGTGtagcataactattcaccccacaAGTCAATACTTTGCTGCATgtctctctataagcttggcacatctagccactgggagttTTACCCATTCAAGGCAAACATGCTCCAGctccaagttggatgggttccgctatCTAAGTCATACcccagattctcaattggattgaggtctgggctttgactaggccctTCCAAGACACAAATGTTTCCCCTTCAACCAGTCGAGTgttccattacatgaaatccaaataaaaatcacaggttgtaatacaacaaaataggaaaaacgccaaggagggtgaatacttttgtTGACCTGAATTCATCTCCTTTCATTGAGGCACAGTTTCAAGTCTTTAGACACCCAGGGCTTGTTGTTGGGAAATACAAAACGTTTTGTTAATGACAGAAACTGGATGTATACTGTCTGTCAACTCGTGGGGATCCTTGagctcctccctactcccctcaCCTGATTTCTCTACAGGTTTTTCACCTGCTGCATGGATAACGTTATAgtgtgaaatgttttgtccatttttaaaataacatcaaattaatcagaaatagtgttaatgttgtaaatgacttgtagctggacatggtagatttaaaaataaatataatatcTACATTtattagcaaccatcactcctgtgttccaatggcatgttagctaatccaagtgtatcattttaaaaggctaattgatcattagaagacCCTATTGCAatgtatgttagcacagctgaaaactgttgtgctgattttaaagaagcaataaaactggccttctttagactagttgagaaactgaagatctcgtacaacgctgtgcactactccctacacagaacagcacaaactgtctctaaccagaatagaaagagtgggagtccccggtgcacaactgagcaagaggacaagtacattagtgtctagtttgataaaccgacacctcacaagtcttcaactgccagcttcattaaataatacctgCAAAACACAAggcctggttgagagaatgcaaagctgtcaaggcaaaggggtggctactttgaagaatctgtttaacactgttttggttactagatgatgCCATAGTTTTAATATCTTccattatacaatgtagaaaatagtaaaatttaAGAAAAACCATCGTAggcatgtccaaacttttgactggtactgttcatTTGAATTGATCGCACTGAATTCCGAACCTCGAGGTTTTGCAGTATTGCCGGCTTTATTGTCGAGCTGCTAAGTAACTACTTGACTGGTGAATGTCAACTGCTGGCTTATGGATTATGAATCGGTGCCTTTATATCACATTTCAGGTGTGACCCCAGATGTAGACAGTGTGGAAGAAACATTTCTTTctaaggcaggcaggggtcaataatcctgTGAGGTGGGGctaggtacagaacggcaggcagggtcagggcagggcaggcagaacggtcaaAACTAGGAAGGAGCAGGGGAACAAACGCTGGTAGGttttacaaacaaaacaaactggcaacaccggtataaatacacaggggataatagaCGACACCTtgaggggggtggagacgagcacaaagacaggtgaaacagatcaatgaTGAAAACCACCATTGTAAGACTTTGTGGCCCAGATTTGAGAAATTATTAATTAAGCCTGAGCTGAGGTTTCTAAAGTTTACTTAAACACATTTAACTTTTCATTAACATGTTGACCTATTTCAGCTCAAAGAGGCAACCTCAGCCTTGAAAATACAAATTTGCCTCCATCCATAACCTGTGGAGCCCGACGACATGGTGACCCTGTGCTTCAGACACCTGAACAACAGTCAAGACCAACCACTAACAGACATGGCTCAAGACTGGCAGCCAAGAAAAATAAAACACAAGGTCAACCATCAAGATGTGGATGAAGAGCTGCTTGCGTTTGTCAGGAAGCCAATCACTCCTGCTGCTACCTTGAAGGATGAGGCATTTGTACACAGCCTTGTGCCAGAGCTGAAGTAAATAGGAAGAAACAAGGGACGTCTGAAAGTGCAACTACTATTTATTGTAAACTGGCAAGAAAAGGCGCTAACAACATTGAACCAATGATATTACTTTGGGGGaggagtttgttttgatatttcaacctacttgtcctgatcacgtctggtgtgaatggacaaaatcaacatgcggaCGCAAGCGCGTGCCGAGTGTAGTCAGCATGTTGTGTTAACACTGGTTTTGGCGTGCACTCATGAAAATGTCACTGGACTTTAGCAAGACAACATATGAAGCATCTTTATTTGCTCCGCACTGGACCAAGATCCAATGAACTTGAGTGAAAGTCCTTGAACCAAAGTTAATGTTTGCTCTGCATGTACATTTATACCTATTAGCATTGTGTCTAACTGTCCAGTGTTGAGATGGAGATGAGTGGCCTCCTGAGTGTTCTGCTGGTCACATCAGCAGCCTTGCTGTTTATAGCTAACGGACAGAGCAACTATGATATGTTGACGGAGGTTGACAAGAAACATGTTGACATGGCTATAAGATATGCAAATAAGAATAGTGAGATTCAGAAATATAATCCAAAAGAGCACCTCAATTTTTTACAAGTTATTGGACAATCTGAGATCAATGCTCGGGAATTTAACATCAACTTGTTGTTGAAAGCAACAAACTGCCCTAAGGCCAGTAGTGATAGTGAACATCGCCCTGAATGTAGCTTTAAATCCAGAAGGCCTTATATAAACTGTGTTGTTTGCAGCAAAGACTTCCATGACAGCACTGACCCCTACATTGACTGTGTTCTCCACAAAGATGTGAAGAAGGTAATATGcttcaaaacatagaaaaaaatgTCATACACAAACTTTTACTttaaaaatacacattttgttCAATTCTcatttcattcaactttttctcCTGACAAAATCATTGTTTTTATATGAATATTATTTTCAGCAAGATGATGTCCGATATGACAAGTGTTCATCTCTTCTTCATGGAGGGCTTACAACTTTAGCCTTACATGCCGAAGAAGACCTTCAGACTGGATGCCTCGGCTGTTTCTGATAACTAATGAAAGAACGTGTCCAGAACGGATGGTCAGAGGCCGTCCTTTATAAAGCACTTCTGTCTTTGGATTTATAATGTAGCCTTTTGGGAGCTTCGGTTGGAATTGAACACAATGCAATTGTCTCAAAATTACTCTTCCCCAGTTTTGAATCTCTCGTAATACACAAATAAATATTGTAAAAACGTACCCTTCTTTTCTGATTCTCCACATATATTCAAAGAAATTGAGAGCAGTCTGCTACTTAAGATTCACATGGATTACCCCGCTGcttatttcaaaataatattaCTGTTGAAAGTAAAGCTTACTCTAACTTAACCAGTATGAGGGGTGAGAAATGAAATAAGGATGTTATTGGTTTCTTTTTTTCTGAATCTTAAAATTTGTTTTACAATTTTGGGAAGAAAATTGTCTGTATGTCTGCATATGTCTTGCAGTGTAAAATGATTGCAGCTCTGTTTCTACTTCTCTCAGGGCAGAGTGCCCACAGTCTtatctctgggcagccaggtctgCCTGTGACCGCAGATCACTACTAGATTTTTATAGGTAACATAATGAACTTAGGTCTGGTCCCTATGGCCAGGCTGTGTTCACGGAGTCTGCACATTGTCAATTCAGAATTTTCCTTAGTCACtgtgaacatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgtatttttt

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2438946 lncRNA downstream 40798 36196849 ~ 36197432 (-) True G2132969
TU2438969 lncRNA downstream 79942 36157228 ~ 36158288 (-) False G2132992
TU2438971 lncRNA downstream 80441 36157228 ~ 36157789 (-) True G2132992
TU2438875 lncRNA downstream 160527 36077476 ~ 36077703 (-) True G2132934
TU2438864 lncRNA downstream 196404 36041534 ~ 36041826 (-) True G2132923
TU2438985 lncRNA upstream 601 36250376 ~ 36255942 (-) True G2133005
TU2438986 lncRNA upstream 7962 36257737 ~ 36258004 (-) True G2133006
TU2438989 lncRNA upstream 17469 36267244 ~ 36267598 (-) True G2133009
TU2439007 lncRNA upstream 62994 36312769 ~ 36313075 (-) True G2133027
TU2439030 lncRNA upstream 88533 36338308 ~ 36338554 (-) True G2133048
XM_036966204.1 mRNA downstream 6070 36230055 ~ 36232160 (-) False LOC118944824
XM_036966205.1 mRNA downstream 6070 36230518 ~ 36232160 (-) True LOC118944824
XM_036966173.1 mRNA downstream 19556 36192769 ~ 36218674 (-) False fastk
XM_021590066.2 mRNA downstream 19556 36197798 ~ 36218674 (-) True fastk
XM_021590064.2 mRNA downstream 173658 36053418 ~ 36064572 (-) True LOC110509100
XM_036967106.1 mRNA upstream 89310 36339085 ~ 36391015 (-) False LOC110508243
XM_036967107.1 mRNA upstream 99622 36349397 ~ 36391023 (-) True LOC110508243
XM_036967108.1 mRNA upstream 141499 36391274 ~ 36398759 (-) False LOC118944889
XM_036966235.1 mRNA upstream 152794 36402569 ~ 36419771 (-) False faim2a
XM_036966234.1 mRNA upstream 152794 36402569 ~ 36420014 (-) False faim2a
TU2438948 other downstream 12851 36224213 ~ 36225379 (-) True G2132971
TU2438849 other downstream 213029 36023780 ~ 36025201 (-) False LOC118944844
TU2438850 other downstream 213029 36023790 ~ 36025201 (-) True LOC118944844
TU2438804 other downstream 220398 36005489 ~ 36017832 (-) False lyrm4
TU2438987 other upstream 13227 36263002 ~ 36263330 (-) True G2133007
TU2439020 other upstream 306725 36556500 ~ 36557453 (-) True LOC110509111
TU2440638 other upstream 1516943 37766718 ~ 37939843 (-) True LOC110509127
TU2440825 other upstream 1878354 38128129 ~ 38130407 (-) True G2134625
TU2441345 other upstream 2269796 38519571 ~ 38526920 (-) True G2135034

Expression Profile