RNA id: TU2439007



Basic Information


Item Value
RNA id TU2439007
length 307
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G2133027
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 36312769 ~ 36313075 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CACCAATATAATCTGTAAACAAGCATGAATTGAGACAGAAAGATAATGGTGGCAAGAGGCCAAGGGGTGTTAATCATCTACATAGAGGGGAGTGACCATGTGTGTTATCTGAAAGTGGAAGTGATTCAATATTTCCACGACAGTCTCTGATTCAACTACCATGGTTTCTTCAACATTACTCCCTTCTTCCACTCTTCTGACCACCTCCGGATAGGAGACACGCTGGACTAATTCTTGCCACCTCGGTCTCCTTCAATCTAACAGGGCACTTCATGAATTCTGGTGCATGCTCCTCCCATCTACATAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2438989 lncRNA downstream 45171 36267244 ~ 36267598 (-) True G2133009
TU2438986 lncRNA downstream 54765 36257737 ~ 36258004 (-) True G2133006
TU2438985 lncRNA downstream 56827 36250376 ~ 36255942 (-) True G2133005
TU2438955 lncRNA downstream 69584 36234468 ~ 36243185 (-) True G2132978
TU2438946 lncRNA downstream 115337 36196849 ~ 36197432 (-) True G2132969
TU2439030 lncRNA upstream 25233 36338308 ~ 36338554 (-) True G2133048
TU2439034 lncRNA upstream 57469 36370544 ~ 36371153 (-) True G2133052
TU2439021 lncRNA upstream 80625 36393700 ~ 36398603 (-) True LOC118944889
TU2439012 lncRNA upstream 87334 36400409 ~ 36404741 (-) True faim2a
TU2439039 lncRNA upstream 124170 36437245 ~ 36437444 (-) True G2133057
XM_021590068.2 mRNA downstream 66788 36243661 ~ 36245981 (-) True LOC110509104
XM_036966202.1 mRNA downstream 72430 36235498 ~ 36240339 (-) False LOC118936612
XM_036967106.1 mRNA upstream 26010 36339085 ~ 36391015 (-) False LOC110508243
XM_036967107.1 mRNA upstream 36322 36349397 ~ 36391023 (-) True LOC110508243
XM_036967108.1 mRNA upstream 78199 36391274 ~ 36398759 (-) False LOC118944889
XM_036966235.1 mRNA upstream 89494 36402569 ~ 36419771 (-) False faim2a
XM_036966234.1 mRNA upstream 89494 36402569 ~ 36420014 (-) False faim2a
TU2438987 other downstream 49439 36263002 ~ 36263330 (-) True G2133007
TU2438933 other downstream 62994 36235515 ~ 36249775 (-) False G2132966
TU2438943 other downstream 62994 36238230 ~ 36249775 (-) True G2132966
TU2438948 other downstream 87390 36224213 ~ 36225379 (-) True G2132971
TU2438850 other downstream 287568 36023790 ~ 36025201 (-) True LOC118944844
TU2439020 other upstream 243425 36556500 ~ 36557453 (-) True LOC110509111
TU2440638 other upstream 1453643 37766718 ~ 37939843 (-) True LOC110509127
TU2440825 other upstream 1815054 38128129 ~ 38130407 (-) True G2134625
TU2441345 other upstream 2206496 38519571 ~ 38526920 (-) True G2135034
TU2442402 other upstream 2692386 39005461 ~ 39006050 (-) True G2135837

Expression Profile