RNA id: TU2438402


Basic Information

Item Value
RNA id TU2438402
length 6034
RNA type TUCP
GC content 0.50
exon number 35
gene id G2132519
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 36339094 ~ 36364994 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCTCAAAGTGAGATGATGGCTCCAGCCCCTTTATTTCAGGAGGTCATGATTGGACAAATGATTTAAGACAAAGCAAAGAATCTACTCATATTCAATCAGAACAAAAAACTAATGGAGATGAGGGCTATACTGAATTCTCAACCAGATACAATTCTAATGTCGTGCATTTCACTAACAAGGCTGCAAATTAGACAAAATGGACCCATAGCGCCCACTGATCTAAAGTCAATGGTGTCAGGATATATTATCTTGGAAGAAACGCCAAATAACAAGTCTGAAGATTGCGaacctatttaaaaaaaaaaaacgaggtAAAAACGAGAGcataacataaaaaaatagaaaagttTGAATAGAATCTCAAAGTCAACTATATTTCCCCCAAAAATGAACATAAAAAAATATTCACTAAACTATTACTTTTAACAGTCAAGGAAAATCACATTCAAAGCAGTTTTTTTGCATGGAGGAAGGCATGATTCTTCATATTTACCATTTACATATGCATCTGGAGTGTCGGTGgtgcacatactgtactgtgcGATCACTTGTGCTATCACTTAATGGCTAATAACAAATCGTGTTTATGACAGGCTACTCCTGTTATCTATTCTAACATTTCCCTGATTGTTTATAGTAGCCATTTACATTCAAATGGACAGTTGATCAACTACGCCATCCATTCCTGTTGGTAAGTCACAGTGAATTTCCAGGTCTCTACAATCTGTGAGAGGAGTATCTTGTCTGGGAAGGAGGCCTCCACGTCAGGCAGGACTTCTACTCCTTTGCGGTCCATGTATCCAGCCAACGTCTCTTTGACACTCCAGTCTGGTTTGTAGGTGTCTGAGACATGTGGTTTCCCCAGATTCAGCAGGAGGAACTCGTGCATCTCCAGTAGCCAGGTGTCAACGTGACCCTTGGAGATGAATCCCTGGAGCAGcctcttctgttcctcctccAGGGGCTGCTGGTACTCTGTAGACACCCCAGAGAAAGGGTcCCTCTTCAGACTCTTCAGCATGTTCTCTGATTTGAGGGAAGACAGGAGCTGCCACAGAGCCACACCGTGCTTCAGACTGCACCTGCCCAGAGCCTTTAAGATGTGAGGATCCATCTGCTCGCCCATCTTCAGCATGTCCTCCAGGTAGCAGTCCAGGGGCATCTGGGAAACTCCCCCAGTCATGGACAGGAAGCCCAGAGCCAGCTCCACAGCCTTCAGGGCTTCACACACCTCACTGTACGACTGCAGATCCCTGGACAGGGCTGTGAGGGTCAGGGACGGCAGATGCTCCTGAGACACGTTTCCTTTCACCATTTTGAAAATGATGTCATAATCTCTCTCGTGTCTGGTGACCAGAGTGGGGATTCCAGTCAGTGTGATGAGAGGCTTGCCCTGCAGGAAACGGGTCAGAACCTGCTGCTGGATCTTGGGCAGGTCGTACTCAGACAGGGTCTCCTTGCCACGCTCCAGGCTGTACTGGCAGTTAGACAGCACCAGGGGCAGCAGGTCCTTCTCCAGTTCATAGCGGATCACATGCAGCTCTGTCAGCTCTGACAGGCTCACCTTGTAGCTGGTGTCTTCCCCAGTGTGGCGGTCCACAGAGTGCAGCAGCTCATTGTGAAGGGCCACCAGGTAGCTTAGCAGAGCCGTGGAACACAAGCCTGGACCCTGGCGCCGCGGCAGGAGGTACTGGAGGTCACTGTCCAGGTCCAAATCATCCTTCCAGAAGTCTTCTGGGATCTTTAtctcatTGGTGGCTACAGATACTCTGAGCAGGTTCCACGTGTTCAGAAATATCTGGACGTGCTTCTCATACCACACTCTCATTGGTCCTGACTGTCGTTGGATGAACTCTCTGATGGAGACATCCATCAGGTCTGATGAGTTCTGGAACTTTTTCACCAGACTCTTCTGTAGGGCCAGGATATGTGGAAGGAACTTGACCTGCCGGAACTCCGCCTCCTTCTGTAGGAACCTCCAGAGTAATGGCAGCTTGTCCTTTCCGTCATTCTGTTCTACGATGTGGGTGAGACTGAGTAGGGACACCCTCTCTCTGCAGCTCCAAACCCCTGAACAGTGGACCTGGGAGCCCTGAGACAGGGAGGACAACGGACACTCGTCCCCAAATGTCACCCTCATGACGAAGTTAGAGGAGACACGGGAGTCGTCTCTGATGGTGGCGTTCACCTCCCTCAGCTGCTGGTCAAGTTTCTTCAACTGAGGAGTGATGATGTCAGTAGCAACAGTTGTCTCCCAGGTATCTCTTGCCTCTTTAGTTGAGAGTTGGGGATCATTGCCAGCCGGCAATTGATTGGTCGGTGGTGGTTCCAGAATGGATCTGACTATCAGGTGGACGGTGGTGACCGTGTCATCATTTCCCTTCCCCAGGGCTTTGGTCAGCTGATCCATGTCTTTCAGCAGGTGACAAATCAGAAATTGGCAGGCGTCCTGGACTGGAGGCTGGATGATCTGCTGGATGGaCTGTGGCTGCTCTGAGGCCCCTCTCAGCATGGCCAGGTGGGTGAGCAGTCTGACCAGGATGAAGGGGGTGTGGGACATGTTTTTGgtgtccagggtgtctgggttgTCCCTCCTCTCAGGGTCTCCCAGGATGTGGCCAGTCCTTGTGAGATCTCCCTGCTGTAGCTCCATCTTCCGGAAACCAGTCAAGGGAACATGGTTCTCCCCTCCAATCTCCGCCTCACACTCTAGACATTTTGCCTTATGGGTGGGTTGACCACACTTATCCACAACACAGGGGTGACCATTCGGACAAGAGTACCAGGAGAGTCCATAATCCACTTTATTCGGTGTTATAAGCCTTTGAGCGACAGCCAGCATGTCCTCAGGCATTGTGGGTAGAAAGGCACTCAGCATATTGTTGGGAGACAGGCCAAGCTGCTGTAGAGGTGTGAGCAGCCCTTCTGTCCCAGTGAGCAGCACAGCAGACATGTGGACAGCCAGCTCTATAAGGGTGTGCTCCACACTGGACCGGTCTGCCAGGACACTCAGTCCTCCCATCCTGTTGTGAACCAATTCTTTGGCAAAGTCCCTCACTTCCCTGCGATGTAGGTACCTTGATCCCTCGATGAAGTCATCAAGTGCTTTGCATTGCTTaggggtggggtggaggcctgTGTTGGCTGCTCGGTACAGACTGGTGACTTCTCTGAAAAGAGCCAGCAGGATATACAAGGTCCGCCTCCTTGCAGGTGCAGTACATCTCTGACAGGTATCCTCAATCTCCTGCACACTGTCCTCTAGTACTGCTTTGGCAACAGCCTCGCGGATAACCTGGTAGTCGTCTCCATAGACGAGATACTGGTCCATCTGGCCAACATCTTCATTCTGTTGCTGCACCTCTTCAGGAAAAAGCCACCTGTACGTCTCTGTATCCCTCAGCATTCTCTGGACATACTCTACACCCTGCTGGCTGCTGATGTTGCGGATCAGGTACACCCTGTACCAGTCGTTCTTACTCTCCTTACACAGGCTCCTAACAGCACACAGGAACTCCTCGACCGCATCCTGACGATTTTCACATTCCCCAGACTGTGTGCTATGGAGCAAGTGTGCAGCCGTGTCCAGGCATAGACGGACCCTCGCGATCTGTTGCAGGTACTCTATTGTGACAGTCTCAGCCGACGCAGTGACAGAGTCCAGGAAGTGACTCAAGAACTCAGTCTCTTTCTGCAGGTAGGCCTGCTGGTCTGCAGGCTTCTGGCATTCATGTGGCTTTCTGTCGAACATGGAGTCCTCAAGGCAGTTGATGTAGAGCGCATAAAGTTCATTTTTATCCTCAGCCTCTAGAATGTTGCTCTCTTCTATCAATGTCAAATACTGCTGCAGATATTCTTTGACTTCATCAAAGGTGTACTTGAGCAGAAGCTTGAGTATCACTGATCGCACCACAGGATTCTTGTCCATAGACTCATCAAATGGTGAGAAATCTTTGGTGTGTATCTGACTTTGTGCTCTGATGAGTGGGATGGGTTCTGTCTCGACCATGAGGAAGGACAACAGGTGCAGGATGACACCTTTTGATGGGGGGATGTTGTCCTTGAAGCACACAGTAGTGACCAGGTCTATGAAAAACGCATTGCAACTCTGCCTGAACTGGGCGTTTAGGGTGATGCAAGCTCTTATGTCCTCAGACACTTTGACCTGGAAGTCATCTGGTAGTTCGTGTTTGCACATGGGGCAGTACATTTGGCCTGTGTTGAGACATCCTCTGACACAGGTCAGACAGAAGATGTGGTGACAGGGCAGATCCACCGGGTCTTGTGGTTCGCCCATGCACACACGGCACTGGAAACCAAACTTGCAAATCAGATCACTTGCTTTTTGCTTGCAAGTCTTCAGTATTGTAATGATGGCCGCAAATGGTTCCTCCGACTTTACGTCTGAGTTTTTTGCCAGAATTTTGCCTAAGGTATGAGTGTGATCAAGGACCAGAGACTTGAGCGCCCTCTCCTCAGACTCAAAGCCTAGCAGCATGTGTTCCACAAACAGAAAGACGATGCAGATACGGTTCCAATGATTACAGATGTAGTCAAACAGttcccggctcctctctccataCTGCTTCAGGCTTCTCTGGGAGCAGACCAGCTCCATAGACCCCTTCAGTCTTTTCACCTGCTTCAGCCAGTCCTGGCACTGGGCATCAGAGTCCAATGCAGGGGGTTCCAGGAGCTCAACACAGGCAACTGCTGCATAGACATCCAGAACCATCTCTGGGCTGTCCTTCATAAGTGGGATTCTCTGCAGGTGAGGAACCACCTGTGGTTGCAACGACATCATCCTGGTGAGGTTGTGCAGACGGGTACGGTACATGTTGTAGGCAGTGTGGACCAGGGGCAGGGAGGGAATCTCTTCACTTGGAGCTTTTCGTCGCCTCTGGAGCTCATTCACACAGCAGCTCAGGGCTTCACACAGGTGCTTTAACTCCGCCTCCGAAGCCACTTTCATCGTCATGGCAATGAAGTCCTGCAGGTACCTTTGGAAAAATTCCCTCTGCAGTTTCTCACCCAATGTAGCCAGATACTGACCAAGGGGGATTTTCTCAAAGAACACCTCGACACGTCCTCTGGTCTGCTGAGTTTGAATCAATAGTTCGTCCAGGATATCTCTGATCCTCCAGCTAAAGGGCATTGTGCAGCACATGGTCCTCTCAGCTGTGACATGGCTCTGCACCAGGATGGTCTTAGACTCAGAATTGAGATCAAAGTTAGGAATATCAAGCATCTCGTTACTGCCGAATATCTTCAGCCACAGGTTTCGGACTTCCTCCCCACTGTTGCTGTCCAGCAGGAGGTCAAGATTACGGTCCCGGTCGATGACTGAGACCAACTGGGCCAAGAGGGGTGTGACCACTGCTTGGATTCTCTTCCATAGAGTTTGTGTGAAGGTTCCCCCCTCCTGAAGAGCATCGATGTTGGATGCCTCCGTTAACACCCAGAACTTGGGGGAAGGGATATTTCGCTCACGGTTCTCCAGTAGAGTGTGAAGGCGGCTTCTCAGGGTTGTCAGGAACGTAGCTTTCAGGTCCTCGCTATCGTCCAGAAGTGTCAGCAGGATCTCGACCCTCCTGGTGCTGAGAGCTCCACTGTCCTCCTGATCTCTGAGCATGCTCACTGCACTCTGCACACAGCTTCGCATCAGATCTCTGGCATCAAACTCAGCCTAAAACAACAACATGCTCACATGAATAACACACAACTGACCTTGTTAGGTTTACAGAAACCAGAAGCACATGCATATTATAATTAAGAACTGCAATACAAACTTGTATACAATATGTAGTATACAATACTTACAGAGTGCTCTACCCCATGTGCCTCGATGTATGTGTCATCTGTTTGCATTGCTGGAACAAGAAAGAAAACTATGAAAAAACGAATTATCTAGGATTATTTACAGTCAATTCCCAACTATGGCATTTGTGCTACTGTGCATAATAACAGTTGGtaaagcatggcacttgcaatgaaAGGGTCATGGGTTCACTTCCCACTGGGGCTgcccataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2438413 lncRNA upstream 1623 36332402 ~ 36337471 (+) True afg3l2
TU2438464 lncRNA upstream 76593 36262281 ~ 36262501 (+) True G2132578
TU2438414 lncRNA upstream 77789 36260059 ~ 36261305 (+) True G2132531
TU2438463 lncRNA upstream 79589 36258778 ~ 36259505 (+) True G2132577
TU2438462 lncRNA upstream 80850 36257804 ~ 36258244 (+) True G2132576
TU2438406 lncRNA downstream 9360 36374354 ~ 36375612 (+) True G2132523
TU2438501 lncRNA downstream 10906 36375900 ~ 36376608 (+) True G2132613
TU2438502 lncRNA downstream 11674 36376668 ~ 36376991 (+) True G2132614
TU2438503 lncRNA downstream 12568 36377562 ~ 36378174 (+) True G2132615
TU2438504 lncRNA downstream 14073 36379067 ~ 36379295 (+) True G2132616
XM_021590071.2 mRNA upstream 1615 36313732 ~ 36337479 (+) False afg3l2
XR_005040207.1 mRNA upstream 87359 36245017 ~ 36251735 (+) False LOC118944825
XM_036966176.1 mRNA upstream 141656 36178766 ~ 36197438 (+) False ubtfl
XM_036966179.1 mRNA upstream 141656 36178766 ~ 36197438 (+) False ubtfl
XM_036966177.1 mRNA upstream 141656 36179154 ~ 36197438 (+) False ubtfl
XM_036966843.1 mRNA downstream 109138 36474132 ~ 36481456 (+) False zgc:136930
XR_005040261.1 mRNA downstream 109230 36474224 ~ 36481583 (+) True zgc:136930
XM_021590079.2 mRNA downstream 126495 36491489 ~ 36495849 (+) True LOC110509110
XM_021590081.2 mRNA downstream 157899 36522893 ~ 36528580 (+) False LOC110509112
XM_021590082.2 mRNA downstream 204672 36569666 ~ 36576319 (+) True LOC110509114
TU2438299 other upstream 363962 35973439 ~ 35975132 (+) True LOC110508289
TU2438124 other upstream 638859 35699846 ~ 35700235 (+) True G2132291
TU2437711 other upstream 1246060 35091699 ~ 35093034 (+) True G2131933
TU2437109 other upstream 1555676 34702206 ~ 34783418 (+) True G2131426
TU2437076 other upstream 1651454 34687271 ~ 34687640 (+) True G2131416
TU2438499 other downstream 562 36365556 ~ 36369967 (+) True G2132611
TU2438557 other downstream 157760 36522754 ~ 36525415 (+) True LOC110509112
TU2439594 other downstream 673659 37038653 ~ 37038924 (+) True G2133551
TU2440527 other downstream 1604109 37969103 ~ 37969465 (+) True G2134356
TU2440611 other downstream 1758402 38123396 ~ 38143819 (+) True G2134434

Expression Profile