RNA id: TCONS_00055729


Basic Information

Item Value
RNA id TCONS_00055729
length 1730
RNA type mRNA
GC content 0.49
exon number 14
gene id XLOC_028752
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 20224099 ~ 20235904 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGGTGGATCAGATTCAACGCAGCTCCGCCGCAGCGCTCAACAAACATCAGCCTGAATAGAGAATAAACATGAGCGATCATTGAGCCTCTCTGCTCTGCCTGCTCAACCCACGGCCATTCACTTGGCTTTATTTCATCCTTATTTCGACCCTCGACTGTCCGGCAAACTGTCTAATCTGGAGGAGGACGGGGAGACTAGCATGGCCATGACGGGAGGCATGGCAGCGCCCCTCCCTATGAGCAACCATACACGTGAGCGCGTGACGGTGGCCAAACTCACGCTGGAGCACTTCTACAGCACCCTGCTCACCCAGCATGAGGAGCGTGAGATGAGgCAGAAGAAGCTGGAGAAGGTGATGGATGAGGAGGGTCTACCTGATGAAGAGAAGAGTATGAGGCGCTCTCTGCATGCTCGTAAGGAGACTGAGTTTCTGCGGCTCAAGAGGACTCGGCTTGGTCTTGATGACTTTGAGTCCCTTAAAGTGATTGGGAGAGGAGCATTTGGAGAGGTGCGGCTTGTTCAGAAAAAAGACACGGGTCACATTTATGCCATGAAGATCCTCAGAAAAGCAGACATGCTAGAAAAAGAGCAGGTGGCTCATATCCGCGCCGAGAGAGATATCCTGGTAGAGGCCGATGGCGCCTGGGTAGTAAAGATGTTCTACAGCTTTCAAGATAAACGCAATCTGTACCTCATCATGGAGTTTCTGCCTGGAGGAGATATGATGACTCTGCTGATGAAGAAAGACACGCTGTCGGAAGAAGCCACGCAGTTTTATATCGCAGAGACGGTTTTGGCTATTGACTCCATTCACCAGCTGGGCTTCATTCACCGAGACATCAAACCTGACAACCTGCTGCTGGACTCACGGGGTCACGTCAAACTGTCTGACTTTGGCCTCTGCACAGGTTTGAAGAAGGCCCATCGGACTGAATTTTACAGGAATCTCACACACAACCCTCCCAGTGACTTCTCCTTTCAAAACATGAATTCAAAGCGGAAAGCAGAAACATGGAAGAAGAACCGAAGGCAGCTGGCATATTCAACAGTCGGTACGCCAGACTATATCGCCCCTGAGGTCTTTATGCAGACAGGCTACAATAAGCTGTGTGACTGGTGGTCTCTTGGAGTCATAATGTATGAAATGTTGATAGGCTACCCACCTTTCTGTTCCGAGACGCCACAGGAAACCTACAGGAAGGTCATGAACTGGCGAgaaacactaactttccctcctGAAGTCCCCATTTCAGAGAGAGCCAAGGAATTGATCCTTAGGTATTGCACAGATGCAGAAAACCGGATTGGATCAGGAAGTGTGGATGAAATCAAATCTCATCCCTTTTTTGAGTCTGTAGACTGGGAGCATATCAGAGAGAGACCTGCTGCTATTTCCATAGACATCAAGAGCATTGACGATACGTCCAACTTTGATGACTTTCCAGAGTCAGACATTCTGCAGCCAGCAAATGTAACAGAATCAGACTTCAAGTCCAAGGACTGGGTTTTCCTCAACTACACCTACAAACGCTTCGAGGGCTTGACACAGCGTGGCACCATCCCTACTTACATGAAGGCGGGCAAGGCGTGAAACTGGCACAGATGGTCTGGAAGAGGAGGATTAGAATGTAAATGACAATTCAaatgcagatttctgcagatgaAAAGCTTATGCACTGCCGCTTTGTGCTACACAGTAGACCTGTTCTCAGAGGAGTCCATGGTGacg

Function

GO:

id name namespace
GO:0018105 peptidyl-serine phosphorylation biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-798 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction and peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Is expressed in several structures, including adaxial cell; intestinal bulb primordium; liver and biliary system; olfactory system; and yolk syncytial layer. Orthologous to human STK38L (serine/threonine kinase 38 like).

Ensembl:

ensembl_id ENSDART00000193655

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055720 lncRNA downstream 96172 20126188 ~ 20127945 (-) False XLOC_028747
TCONS_00058201 lncRNA downstream 100059 20122913 ~ 20124058 (-) True XLOC_028746
TCONS_00058200 lncRNA downstream 176233 20044867 ~ 20047884 (-) False XLOC_028741
TCONS_00058199 lncRNA downstream 176233 20044867 ~ 20047884 (-) True XLOC_028741
TCONS_00058198 lncRNA downstream 176715 20044867 ~ 20047402 (-) False XLOC_028741
TCONS_00058202 lncRNA upstream 1356340 21592244 ~ 21628998 (-) True XLOC_028761
TCONS_00058203 lncRNA upstream 1398108 21634012 ~ 21647992 (-) False XLOC_028762
TCONS_00055746 lncRNA upstream 1401820 21637724 ~ 21643055 (-) False XLOC_028762
TCONS_00055748 lncRNA upstream 1406981 21642885 ~ 21647587 (-) False XLOC_028762
TCONS_00055747 lncRNA upstream 1406981 21642885 ~ 21647587 (-) True XLOC_028762
TCONS_00055727 mRNA downstream 1935 20198496 ~ 20222182 (-) True XLOC_028751
TCONS_00055726 mRNA downstream 15951 20198294 ~ 20208166 (-) False XLOC_028751
TCONS_00055725 mRNA downstream 42153 20178694 ~ 20181964 (-) True XLOC_028750
TCONS_00055723 mRNA downstream 46249 20176143 ~ 20177868 (-) True XLOC_028749
TCONS_00055722 mRNA downstream 68032 20141191 ~ 20156085 (-) True XLOC_028748
TCONS_00055731 mRNA upstream 1557 20237461 ~ 20243021 (-) True XLOC_028753
TCONS_00055732 mRNA upstream 35559 20271463 ~ 20292821 (-) False XLOC_028754
TCONS_00055733 mRNA upstream 38451 20274355 ~ 20292853 (-) True XLOC_028754
TCONS_00055734 mRNA upstream 66928 20302832 ~ 20314749 (-) False XLOC_028755
TCONS_00055735 mRNA upstream 67492 20303396 ~ 20313810 (-) False XLOC_028755
TCONS_00055724 other downstream 46249 20176143 ~ 20177868 (-) False XLOC_028749
TCONS_00055714 other downstream 160883 20049324 ~ 20063234 (-) True XLOC_028742
TCONS_00055699 other downstream 1176562 19047466 ~ 19047555 (-) True XLOC_028730
TCONS_00055684 other downstream 1569856 18654155 ~ 18654261 (-) True XLOC_028720
TCONS_00055683 other downstream 1570876 18653148 ~ 18653241 (-) True XLOC_028719
TCONS_00055737 other upstream 160145 20396049 ~ 20396170 (-) True XLOC_028756
TCONS_00055751 other upstream 1415767 21651671 ~ 21652632 (-) True XLOC_028763
TCONS_00055755 other upstream 2000454 22236358 ~ 22237294 (-) True XLOC_028767
TCONS_00055773 other upstream 2990829 23226733 ~ 23226849 (-) True XLOC_028779
TCONS_00055774 other upstream 3183416 23419320 ~ 23419455 (-) True XLOC_028780

Expression Profile

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