RNA id: TU2439105


Basic Information

Item Value
RNA id TU2439105
length 917
lncRNA type antisense_over
GC content 0.37
exon number 2
gene id G2133115
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 36575378 ~ 36578143 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTTAACATTTAtttaactaggcaagtcagttaatatcTTGTTAAGAGTTAGTATATTGGTGAGTTAGTATATTGGTTAATACGTTTGGAGAACGAGTATTTTTACTCTACCATCATCGTGGCACAAATGTGAAACCATTTGAATCTAGCAGCAGCCGTCTGTAACCTACATCCTTTAGACCAGACCAGGTGAGTCTAGCAGCAACAGTCTGTAACcaggggttgggtaggttactttctaaatgtaatctgttacaagttacactacatggccaaaagtactGTACCTGTTCAAAATTGTTATCAGTAAcatggattacccaaactcattAACGTAATCTGAATGATTTCAGTTACTTTCctcttaagaggcattagaagacaacaaaaaaaaggatTTGTCAAACACATTGGTGAGTCGTCATAGTGGTCTTGTGGTCAAAACTCACTCaagtggaacaaacttaaacatGAGCCTTTTTTttatgctgaattgaatgtcattgagaaaacagaaaaggTCTCAATGTATTTTTTGCAAAACAtaatttctgaatttaaaagtaatctagTTTTTCCAAAAGTATCTTTAATtcgattacaatatttttgctggtaacgtaacttGTACCGTTTTTTGGAGAGGTAATGAGATTACACATAACTGACTACtgtaatctgttactccccaaccctgtctgTAACCTACATCATTTGGACCGGACCACTGAAAGTGTAGGTAAACAAGTGAGAACCATACAGACTCAAACAATATGTCCGCCACTGTCGTTCATTCCAGAATATCAGTCTCGTAGGTCAGTAGTTGGTAGTACGTCAGATTAGGGAAAGACGTTTCTTGGTCTTCGGCACTACCATCCGTTGACGCTGTCTCAACGATGTCCAGGGTCTCCTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2439022 lncRNA downstream 136477 36438508 ~ 36438901 (-) True G2133040
TU2439040 lncRNA downstream 137567 36437593 ~ 36437811 (-) True G2133058
TU2439039 lncRNA downstream 137934 36437245 ~ 36437444 (-) True G2133057
TU2439012 lncRNA downstream 170637 36400409 ~ 36404741 (-) True faim2a
TU2439021 lncRNA downstream 176775 36393700 ~ 36398603 (-) True LOC118944889
TU2439124 lncRNA upstream 30989 36609132 ~ 36609348 (-) True G2133134
TU2439125 lncRNA upstream 33433 36611576 ~ 36611832 (-) True G2133135
TU2439134 lncRNA upstream 45041 36623184 ~ 36623559 (-) True G2133144
TU2439140 lncRNA upstream 51434 36629577 ~ 36629803 (-) True G2133150
TU2439155 lncRNA upstream 77026 36655169 ~ 36655396 (-) True G2133165
XM_036965930.1 mRNA downstream 17846 36526794 ~ 36557532 (-) False LOC110509111
XM_036965931.1 mRNA downstream 17846 36526794 ~ 36557532 (-) False LOC110509111
XR_005040178.1 mRNA downstream 17846 36526794 ~ 36557532 (-) False LOC110509111
XR_005040179.1 mRNA downstream 17846 36526794 ~ 36557532 (-) False LOC110509111
XR_005040180.1 mRNA downstream 17846 36526794 ~ 36557532 (-) False LOC110509111
XM_036966569.1 mRNA upstream 220302 36798445 ~ 36958711 (-) False LOC110509116
XM_036966342.1 mRNA upstream 422380 37000523 ~ 37001147 (-) True LOC118944834
XM_036965879.1 mRNA upstream 736468 37314611 ~ 37323106 (-) False impa1
XM_036965878.1 mRNA upstream 736468 37314611 ~ 37333488 (-) False impa1
XM_036965880.1 mRNA upstream 736468 37314611 ~ 37333488 (-) False impa1
TU2439020 other downstream 17925 36556500 ~ 36557453 (-) True LOC110509111
TU2438987 other downstream 312048 36263002 ~ 36263330 (-) True G2133007
TU2438933 other downstream 325603 36235515 ~ 36249775 (-) False G2132966
TU2438943 other downstream 325603 36238230 ~ 36249775 (-) True G2132966
TU2438948 other downstream 349999 36224213 ~ 36225379 (-) True G2132971
TU2440638 other upstream 1188575 37766718 ~ 37939843 (-) True LOC110509127
TU2440825 other upstream 1549986 38128129 ~ 38130407 (-) True G2134625
TU2441345 other upstream 1941428 38519571 ~ 38526920 (-) True G2135034
TU2442402 other upstream 2427318 39005461 ~ 39006050 (-) True G2135837
TU2442821 other upstream 3225652 39803795 ~ 39829179 (-) True LOC110509145

Expression Profile