RNA id: TCONS_00055731


Basic Information

Item Value
RNA id TCONS_00055731
length 1469
RNA type mRNA
GC content 0.39
exon number 8
gene id XLOC_028753
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 20237461 ~ 20243021 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCATGTGTAAGGCGCACGCTCACTCTGCTAGTGGCGCTCGACCCCTGCTAAGTCCCTTTTATAATCTTTTGGCAGCACTGAAATGGTTcctatccaacttcctgttCCTTTTATTGGACTTCAACATCTACAATCTGTGGCATTCGGATCACTTTACAGAGGCCAAGACCTCATTCCATTCATCTAGTAAGAAGTTAAAGGGTGGCTTTCTGCAGCCGTGTGACACTGAATATCCCAGCTTCGTCTACGAGCCATCAATCAAAGAAACCAACAGCCTGATCAAGTGTGGGAGATGTCAAAAGGTGTTCGTAATTCAACAGATACCAGATAGCAACTTGCTGCTGGTGGTGATTCAGGCTGATTGTGACTGTTCTCGGCAATATCCACCCATCACCATGGAGCCCAAAGAGGTCAAATACAATGCCTCAGTGAAATGTGACCGCATGAGATCTCAGAAGATACGAAGAAGGCCTGAGTCTTGTCACGCTTACCACCCTCAAGAAAATGCCAAGGACTGTGGTGGGGCTGTGGCAATCAGCCTGTCTATCATGCTATTCTTTGCCTGTTTATCAGTGTCAGCACTCATCCATCGATGACAGAGAGCCTGTGTAACCCCCAAGAGAATCATCTATAGTGCATAGACTTAACTCACCATGTTATTAGTTTTGACTAGAACACTTTTTTCTATAATGTAAAGTCTTCAACATCAAACTTAGGTATAGGTTTTCTTTGTAGATTCCTTTTAAACAGTGCTGGGATTTTATGACCTTGTCTTGTCACTGAAAGACCtgcaaaaatgtcttgaaaaatcaGAGTGATCAGTGATTTTGGATTGAAATGAGACCCAGAGAAGGATGAAGAGAAGCTGTGCTTAACTGAACTGTGACATTACAGAGACATAATTTATGGCCAGTAGAATATGTGACCATTTCTCAATGTGAAGCACAAGAAAATTGTACAAAGTGTGCATAAGATatcggtgtgtgtgtgagtgagagacaGAAAAACAGGAATATTTTACATGGATATTCACagtactgttttgtttttttgtttttttaaccaaatgTGGCCATTGGATAAATAAATGACCATTGTGGTATTTGCTGTAAATGTCTCTGAGAGGTTATTTCAAGATTTCAGGGAtgcatttgttgtttgtttgtttgtttgtttgttttttacatttgttatgcACTATCATTAATTTAGCGTCTTTATCAAcattctatatacatttctgttttTGATAAGTGTGTTGCGTTTACTTTCTTATATGAATAATTCTGTAGTGTGTGTTCTCACTCAGGTATAATTGCACAAGAAGGGATTTTTGaggtgtgtgtatttgtttgaatTTTCAAATGTTACTGTAACTGGCACTGTAAATATTACATTACAGCAAGCTCATGTGTCTTACTGTCCACCCAAAACTTAATTTTGAAACGCTTTTGTGTTAAAAGGTGAA

Function

GO:

id name namespace
GO:0046549 retinal cone cell development biological_process
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005245 voltage-gated calcium channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-213 Predicted to enable voltage-gated calcium channel activity. Acts upstream of or within retinal cone cell development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated calcium channel complex. Is expressed in retinal inner nuclear layer and retinal outer nuclear layer. Orthologous to human CACNA2D4 (calcium voltage-gated channel auxiliary subunit alpha2delta 4).

Ensembl:

ensembl_id ENSDART00000048023

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055720 lncRNA downstream 109516 20126188 ~ 20127945 (-) False XLOC_028747
TCONS_00058201 lncRNA downstream 113403 20122913 ~ 20124058 (-) True XLOC_028746
TCONS_00058200 lncRNA downstream 189577 20044867 ~ 20047884 (-) False XLOC_028741
TCONS_00058199 lncRNA downstream 189577 20044867 ~ 20047884 (-) True XLOC_028741
TCONS_00058198 lncRNA downstream 190059 20044867 ~ 20047402 (-) False XLOC_028741
TCONS_00058202 lncRNA upstream 1349223 21592244 ~ 21628998 (-) True XLOC_028761
TCONS_00058203 lncRNA upstream 1390991 21634012 ~ 21647992 (-) False XLOC_028762
TCONS_00055746 lncRNA upstream 1394703 21637724 ~ 21643055 (-) False XLOC_028762
TCONS_00055748 lncRNA upstream 1399864 21642885 ~ 21647587 (-) False XLOC_028762
TCONS_00055747 lncRNA upstream 1399864 21642885 ~ 21647587 (-) True XLOC_028762
TCONS_00055728 mRNA downstream 1557 20224099 ~ 20235904 (-) False XLOC_028752
TCONS_00055729 mRNA downstream 1557 20224117 ~ 20235904 (-) False XLOC_028752
TCONS_00055730 mRNA downstream 4487 20224255 ~ 20232974 (-) True XLOC_028752
TCONS_00055727 mRNA downstream 15279 20198496 ~ 20222182 (-) True XLOC_028751
TCONS_00055726 mRNA downstream 29295 20198294 ~ 20208166 (-) False XLOC_028751
TCONS_00055732 mRNA upstream 28442 20271463 ~ 20292821 (-) False XLOC_028754
TCONS_00055733 mRNA upstream 31334 20274355 ~ 20292853 (-) True XLOC_028754
TCONS_00055734 mRNA upstream 59811 20302832 ~ 20314749 (-) False XLOC_028755
TCONS_00055735 mRNA upstream 60375 20303396 ~ 20313810 (-) False XLOC_028755
TCONS_00055736 mRNA upstream 60542 20303563 ~ 20314796 (-) True XLOC_028755
TCONS_00055724 other downstream 59593 20176143 ~ 20177868 (-) False XLOC_028749
TCONS_00055714 other downstream 174227 20049324 ~ 20063234 (-) True XLOC_028742
TCONS_00055699 other downstream 1189906 19047466 ~ 19047555 (-) True XLOC_028730
TCONS_00055684 other downstream 1583200 18654155 ~ 18654261 (-) True XLOC_028720
TCONS_00055683 other downstream 1584220 18653148 ~ 18653241 (-) True XLOC_028719
TCONS_00055737 other upstream 153028 20396049 ~ 20396170 (-) True XLOC_028756
TCONS_00055751 other upstream 1408650 21651671 ~ 21652632 (-) True XLOC_028763
TCONS_00055755 other upstream 1993337 22236358 ~ 22237294 (-) True XLOC_028767
TCONS_00055773 other upstream 2983712 23226733 ~ 23226849 (-) True XLOC_028779
TCONS_00055774 other upstream 3176299 23419320 ~ 23419455 (-) True XLOC_028780

Expression Profile

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