RNA id: TU2439134


Basic Information

Item Value
RNA id TU2439134
length 376
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G2133144
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 36623184 ~ 36623559 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGTGACTCCCTATTTCCTACaacgtgcactactttggaccggaGTTTACATTCTAACAACGTCCGTGACTCCCTATTTCCTACAACGTGCACTACTTTGGGACCGGAGTTTACATTCTAACAACGTCCGTGACTCCCTATTTCCTACGacgtgcactactttggaccggaGTTTACATTCTAACAACGTCCGTGACTCCCTATTTCCTACGACTGCACTACTTTGGGACCGGAGTTTACATTCTAACAACGTCCGTGACTCCCTATTTCCTACAgcgtgcactactttggaccggaGTTTACATTCTAACAACGTCCGTGACTCCCTATTTCCTACaacgtgcactactttggaccggaGTTTACATTCTAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2439125 lncRNA downstream 11352 36611576 ~ 36611832 (-) True G2133135
TU2439124 lncRNA downstream 13836 36609132 ~ 36609348 (-) True G2133134
TU2439105 lncRNA downstream 45041 36575378 ~ 36578143 (-) True G2133115
TU2439022 lncRNA downstream 184283 36438508 ~ 36438901 (-) True G2133040
TU2439040 lncRNA downstream 185373 36437593 ~ 36437811 (-) True G2133058
TU2439140 lncRNA upstream 6018 36629577 ~ 36629803 (-) True G2133150
TU2439155 lncRNA upstream 31610 36655169 ~ 36655396 (-) True G2133165
TU2439184 lncRNA upstream 61668 36685227 ~ 36687547 (-) True G2133192
TU2439216 lncRNA upstream 93217 36716776 ~ 36716985 (-) True G2133224
TU2439222 lncRNA upstream 98756 36722315 ~ 36722568 (-) True G2133230
XR_005040180.1 mRNA downstream 65652 36526794 ~ 36557532 (-) False LOC110509111
XM_036966569.1 mRNA upstream 174886 36798445 ~ 36958711 (-) False LOC110509116
XM_036966342.1 mRNA upstream 376964 37000523 ~ 37001147 (-) True LOC118944834
XM_036965879.1 mRNA upstream 691052 37314611 ~ 37323106 (-) False impa1
XM_036965878.1 mRNA upstream 691052 37314611 ~ 37333488 (-) False impa1
XM_036965880.1 mRNA upstream 691052 37314611 ~ 37333488 (-) False impa1
TU2439020 other downstream 65731 36556500 ~ 36557453 (-) True LOC110509111
TU2438987 other downstream 359854 36263002 ~ 36263330 (-) True G2133007
TU2438933 other downstream 373409 36235515 ~ 36249775 (-) False G2132966
TU2438943 other downstream 373409 36238230 ~ 36249775 (-) True G2132966
TU2438948 other downstream 397805 36224213 ~ 36225379 (-) True G2132971
TU2440638 other upstream 1143159 37766718 ~ 37939843 (-) True LOC110509127
TU2440825 other upstream 1504570 38128129 ~ 38130407 (-) True G2134625
TU2441345 other upstream 1896012 38519571 ~ 38526920 (-) True G2135034
TU2442402 other upstream 2381902 39005461 ~ 39006050 (-) True G2135837
TU2442821 other upstream 3180236 39803795 ~ 39829179 (-) True LOC110509145

Expression Profile