RNA id: TU2439373



Basic Information


Item Value
RNA id TU2439373
length 247
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G2133359
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 36731178 ~ 36731424 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggtgggcgagggcagtatggagtgcaattgagattgcgtcatctatatatctgtttgggcggtatgcgtCATTGGAGAGGGTCTAAGGTGTCTGGGTTGATGaagttgatgtgtgccataaccagcctttcaaaccacttcatgattacagatgtgagtgctacagggcagtagTCATTGTGGGGATTACACACCGGGACAAGGAGATTTTAAAATGACCTggcagctggtctgcgcatgctctgag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2439222 lncRNA downstream 8610 36722315 ~ 36722568 (-) True G2133230
TU2439216 lncRNA downstream 14193 36716776 ~ 36716985 (-) True G2133224
TU2439184 lncRNA downstream 43631 36685227 ~ 36687547 (-) True G2133192
TU2439155 lncRNA downstream 75782 36655169 ~ 36655396 (-) True G2133165
TU2439140 lncRNA downstream 101375 36629577 ~ 36629803 (-) True G2133150
TU2439375 lncRNA upstream 1117 36732541 ~ 36732785 (-) True G2133361
TU2439382 lncRNA upstream 9803 36741227 ~ 36741571 (-) True G2133368
TU2439384 lncRNA upstream 11075 36742499 ~ 36743016 (-) True G2133370
TU2439399 lncRNA upstream 52953 36784377 ~ 36784581 (-) True G2133384
TU2439402 lncRNA upstream 56769 36788193 ~ 36788424 (-) True G2133387
XR_005040180.1 mRNA downstream 173646 36526794 ~ 36557532 (-) False LOC110509111
XM_036966569.1 mRNA upstream 67021 36798445 ~ 36958711 (-) False LOC110509116
XM_036966342.1 mRNA upstream 269099 37000523 ~ 37001147 (-) True LOC118944834
XM_036965879.1 mRNA upstream 583187 37314611 ~ 37323106 (-) False impa1
XM_036965878.1 mRNA upstream 583187 37314611 ~ 37333488 (-) False impa1
XM_036965880.1 mRNA upstream 583187 37314611 ~ 37333488 (-) False impa1
TU2439020 other downstream 173725 36556500 ~ 36557453 (-) True LOC110509111
TU2438987 other downstream 467848 36263002 ~ 36263330 (-) True G2133007
TU2438933 other downstream 481403 36235515 ~ 36249775 (-) False G2132966
TU2438943 other downstream 481403 36238230 ~ 36249775 (-) True G2132966
TU2438948 other downstream 505799 36224213 ~ 36225379 (-) True G2132971
TU2440638 other upstream 1035294 37766718 ~ 37939843 (-) True LOC110509127
TU2440825 other upstream 1396705 38128129 ~ 38130407 (-) True G2134625
TU2441345 other upstream 1788147 38519571 ~ 38526920 (-) True G2135034
TU2442402 other upstream 2274037 39005461 ~ 39006050 (-) True G2135837
TU2442821 other upstream 3072371 39803795 ~ 39829179 (-) True LOC110509145

Expression Profile