RNA id: TU2439263



Basic Information


Item Value
RNA id TU2439263
length 230
lncRNA type intronic
GC content 0.40
exon number 1
gene id G2133270
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 36803906 ~ 36804135 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTACTTcacatgctttggcaatgttaacatatgtttcccatgccaataaagcccttaaattgaaatttaattgagagtgagagagagacagagagaagaaggcaGTCAGCATCACTATCAACAAAGGGCAGAGGACCAAGATGAGTTAATCATGATtagacaaagaaaaaacagagcCATCGCAATTCTGTCCAGGACCATTGTGGAGTACAGAGGTGTTCCTTCAGAAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2439229 lncRNA upstream 4331 36798526 ~ 36799575 (+) True G2133237
TU2439257 lncRNA upstream 13955 36789573 ~ 36789951 (+) True G2133265
TU2439256 lncRNA upstream 15218 36788202 ~ 36788688 (+) True G2133264
TU2439255 lncRNA upstream 15828 36787821 ~ 36788078 (+) True G2133263
TU2439253 lncRNA upstream 19309 36784250 ~ 36784597 (+) True G2133261
TU2439267 lncRNA downstream 6101 36810236 ~ 36810692 (+) True G2133274
TU2439272 lncRNA downstream 16402 36820537 ~ 36820985 (+) True G2133279
TU2439279 lncRNA downstream 28056 36832191 ~ 36832501 (+) True G2133286
TU2439282 lncRNA downstream 40741 36844876 ~ 36845194 (+) True G2133289
TU2439285 lncRNA downstream 41760 36845895 ~ 36846096 (+) True G2133290
trnas-cga-50 mRNA upstream 116086 36687739 ~ 36687820 (+) True trnas-cga-50
trnas-uga-130 mRNA upstream 116245 36687580 ~ 36687661 (+) True trnas-uga-130
trnas-cga-49 mRNA upstream 117263 36686562 ~ 36686643 (+) True trnas-cga-49
trnas-cga-48 mRNA upstream 118857 36684968 ~ 36685049 (+) True trnas-cga-48
trnas-cga-47 mRNA upstream 120445 36683380 ~ 36683461 (+) True trnas-cga-47
XM_036966341.1 mRNA downstream 173039 36977174 ~ 36982260 (+) True LOC118944833
XM_021590089.2 mRNA downstream 633897 37438032 ~ 37442898 (+) False c28h7orf25
XM_021590088.2 mRNA downstream 633931 37438066 ~ 37442898 (+) True c28h7orf25
XM_036966597.1 mRNA downstream 643604 37447739 ~ 37470801 (+) False LOC110509119
XM_036966598.1 mRNA downstream 643792 37447927 ~ 37470801 (+) False LOC110509119
TU2438557 other upstream 278491 36522754 ~ 36525415 (+) True LOC110509112
TU2438499 other upstream 433939 36365556 ~ 36369967 (+) True G2132611
TU2438402 other upstream 438912 36339094 ~ 36364994 (+) True G2132519
TU2438299 other upstream 828774 35973439 ~ 35975132 (+) True LOC110508289
TU2438124 other upstream 1103671 35699846 ~ 35700235 (+) True G2132291
TU2439594 other downstream 234518 37038653 ~ 37038924 (+) True G2133551
TU2440527 other downstream 1164968 37969103 ~ 37969465 (+) True G2134356
TU2440611 other downstream 1319261 38123396 ~ 38143819 (+) True G2134434
TU2440932 other downstream 1721540 38525675 ~ 38526926 (+) True LOC110508247
TU2441508 other downstream 1985407 38789542 ~ 38985535 (+) True LOC118944840

Expression Profile