RNA id: TU2439420



Basic Information


Item Value
RNA id TU2439420
length 203
lncRNA type intronic
GC content 0.43
exon number 1
gene id G2133405
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 36816624 ~ 36816826 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTTGTGCCATGCATAAGGTTATTTTCTCCACTGAGATTCTCCCATGTGTTTGTCAGTCACACCCTATGTTAGGAGGTGCCATGGTCCAACCAAGCTCCTCGTGCATCTTACAGCTATGGGATGTAGGGAGACAGTGTAGTTTGTATTTCATTCTTCACATGGTTTTCAAACAAGTTAAACCTCAGACAACTTCTATATTCAGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2439416 lncRNA downstream 2798 36813579 ~ 36813826 (-) True G2133401
TU2439414 lncRNA downstream 4586 36811828 ~ 36812038 (-) True G2133399
TU2439370 lncRNA downstream 14994 36800056 ~ 36801630 (-) True LOC110509116
TU2439371 lncRNA downstream 17043 36798459 ~ 36799581 (-) False LOC110509116
TU2439406 lncRNA downstream 19263 36796424 ~ 36797361 (-) True G2133391
TU2439423 lncRNA upstream 1176 36818002 ~ 36819781 (-) False G2133406
TU2439421 lncRNA upstream 2673 36819499 ~ 36819983 (-) True G2133406
TU2439424 lncRNA upstream 3200 36820026 ~ 36820251 (-) True G2133407
TU2439430 lncRNA upstream 9552 36826378 ~ 36831372 (-) True G2133413
TU2439433 lncRNA upstream 22947 36839773 ~ 36840583 (-) True G2133416
XR_005040180.1 mRNA downstream 259092 36526794 ~ 36557532 (-) False LOC110509111
XM_036966342.1 mRNA upstream 183697 37000523 ~ 37001147 (-) True LOC118944834
XM_036965879.1 mRNA upstream 497785 37314611 ~ 37323106 (-) False impa1
XM_036965878.1 mRNA upstream 497785 37314611 ~ 37333488 (-) False impa1
XM_036965880.1 mRNA upstream 497785 37314611 ~ 37333488 (-) False impa1
NM_001160581.1 mRNA upstream 497791 37314617 ~ 37323052 (-) True impa1
TU2439020 other downstream 259171 36556500 ~ 36557453 (-) True LOC110509111
TU2438987 other downstream 553294 36263002 ~ 36263330 (-) True G2133007
TU2438933 other downstream 566849 36235515 ~ 36249775 (-) False G2132966
TU2438943 other downstream 566849 36238230 ~ 36249775 (-) True G2132966
TU2438948 other downstream 591245 36224213 ~ 36225379 (-) True G2132971
TU2440638 other upstream 949892 37766718 ~ 37939843 (-) True LOC110509127
TU2440825 other upstream 1311303 38128129 ~ 38130407 (-) True G2134625
TU2441345 other upstream 1702745 38519571 ~ 38526920 (-) True G2135034
TU2442402 other upstream 2188635 39005461 ~ 39006050 (-) True G2135837
TU2442821 other upstream 2986969 39803795 ~ 39829179 (-) True LOC110509145

Expression Profile