RNA id: TU2439453



Basic Information


Item Value
RNA id TU2439453
length 213
lncRNA type intronic
GC content 0.71
exon number 1
gene id G2133434
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 36877822 ~ 36878034 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cccaagcagcccctctgtcccgagctgctgccgcccttctgtcccgagcagctgccgcccctcggtcccgagcagctgccgcccctctgtcccgagctgctgccgcccctctgtcccgagcagctgccgcccctctgtcccgagcagctgcttcacctctgtcccgagctgcccctctgtcccaagcagcccctctgtccagtggggtcattg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2439452 lncRNA downstream 294 36877263 ~ 36877528 (-) True G2133433
TU2439446 lncRNA downstream 10242 36867279 ~ 36867580 (-) True G2133429
TU2439445 lncRNA downstream 12395 36865192 ~ 36865427 (-) True G2133428
TU2439441 lncRNA downstream 20777 36856835 ~ 36857045 (-) True G2133424
TU2439436 lncRNA downstream 32589 36844850 ~ 36845233 (-) True G2133419
TU2439454 lncRNA upstream 1547 36879581 ~ 36879943 (-) True G2133435
TU2439464 lncRNA upstream 10256 36888290 ~ 36888518 (-) True G2133441
TU2439478 lncRNA upstream 16530 36894564 ~ 36900828 (-) False G2133445
TU2439473 lncRNA upstream 18473 36896507 ~ 36900828 (-) True G2133445
TU2439491 lncRNA upstream 31269 36909303 ~ 36909515 (-) True G2133452
XR_005040180.1 mRNA downstream 320290 36526794 ~ 36557532 (-) False LOC110509111
XM_036966342.1 mRNA upstream 122489 37000523 ~ 37001147 (-) True LOC118944834
XM_036965879.1 mRNA upstream 436577 37314611 ~ 37323106 (-) False impa1
XM_036965878.1 mRNA upstream 436577 37314611 ~ 37333488 (-) False impa1
XM_036965880.1 mRNA upstream 436577 37314611 ~ 37333488 (-) False impa1
NM_001160581.1 mRNA upstream 436583 37314617 ~ 37323052 (-) True impa1
TU2439020 other downstream 320369 36556500 ~ 36557453 (-) True LOC110509111
TU2438987 other downstream 614492 36263002 ~ 36263330 (-) True G2133007
TU2438933 other downstream 628047 36235515 ~ 36249775 (-) False G2132966
TU2438943 other downstream 628047 36238230 ~ 36249775 (-) True G2132966
TU2438948 other downstream 652443 36224213 ~ 36225379 (-) True G2132971
TU2440638 other upstream 888684 37766718 ~ 37939843 (-) True LOC110509127
TU2440825 other upstream 1250095 38128129 ~ 38130407 (-) True G2134625
TU2441345 other upstream 1641537 38519571 ~ 38526920 (-) True G2135034
TU2442402 other upstream 2127427 39005461 ~ 39006050 (-) True G2135837
TU2442821 other upstream 2925761 39803795 ~ 39829179 (-) True LOC110509145

Expression Profile