RNA id: TU2439464



Basic Information


Item Value
RNA id TU2439464
length 229
lncRNA type intronic
GC content 0.48
exon number 1
gene id G2133441
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 36888290 ~ 36888518 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtaggtgaacggatgatctccgcatgtatggttcccaccgtgaagcatggaggaggaagtgtgatggtgtgagggtgctttgctggtgacactgtctgtgatttatttagaattcaaggcacacttaaccagcgtggctaccacagcattctgcagtgatacaccatcccatctggtttgcgcttagtgggacaatcatttgtttttccacaggacaatgacccaacac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2439454 lncRNA downstream 8347 36879581 ~ 36879943 (-) True G2133435
TU2439453 lncRNA downstream 10256 36877822 ~ 36878034 (-) True G2133434
TU2439452 lncRNA downstream 10762 36877263 ~ 36877528 (-) True G2133433
TU2439446 lncRNA downstream 20710 36867279 ~ 36867580 (-) True G2133429
TU2439445 lncRNA downstream 22863 36865192 ~ 36865427 (-) True G2133428
TU2439478 lncRNA upstream 6046 36894564 ~ 36900828 (-) False G2133445
TU2439473 lncRNA upstream 7989 36896507 ~ 36900828 (-) True G2133445
TU2439491 lncRNA upstream 20785 36909303 ~ 36909515 (-) True G2133452
TU2439492 lncRNA upstream 21059 36909577 ~ 36909792 (-) True G2133453
TU2439498 lncRNA upstream 31339 36919857 ~ 36920871 (-) True G2133459
XR_005040180.1 mRNA downstream 330758 36526794 ~ 36557532 (-) False LOC110509111
XM_036966342.1 mRNA upstream 112005 37000523 ~ 37001147 (-) True LOC118944834
XM_036965879.1 mRNA upstream 426093 37314611 ~ 37323106 (-) False impa1
XM_036965878.1 mRNA upstream 426093 37314611 ~ 37333488 (-) False impa1
XM_036965880.1 mRNA upstream 426093 37314611 ~ 37333488 (-) False impa1
NM_001160581.1 mRNA upstream 426099 37314617 ~ 37323052 (-) True impa1
TU2439020 other downstream 330837 36556500 ~ 36557453 (-) True LOC110509111
TU2438987 other downstream 624960 36263002 ~ 36263330 (-) True G2133007
TU2438933 other downstream 638515 36235515 ~ 36249775 (-) False G2132966
TU2438943 other downstream 638515 36238230 ~ 36249775 (-) True G2132966
TU2438948 other downstream 662911 36224213 ~ 36225379 (-) True G2132971
TU2440638 other upstream 878200 37766718 ~ 37939843 (-) True LOC110509127
TU2440825 other upstream 1239611 38128129 ~ 38130407 (-) True G2134625
TU2441345 other upstream 1631053 38519571 ~ 38526920 (-) True G2135034
TU2442402 other upstream 2116943 39005461 ~ 39006050 (-) True G2135837
TU2442821 other upstream 2915277 39803795 ~ 39829179 (-) True LOC110509145

Expression Profile