RNA id: TU2439491



Basic Information


Item Value
RNA id TU2439491
length 213
lncRNA type intronic
GC content 0.44
exon number 1
gene id G2133452
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 36909303 ~ 36909515 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtggaatcaCGCTTCCCCATttggcagtccaacagacaaatctgggtttggcagataccaggagaacgctacctgcccgaatgcatagtgccaactgtaaagtttggtggaggaggaataattgtctgggtctttttttcatggttcaggctaggtccattagttccagtgaaggaaaatcttaactctacagtaTAAATTGACATTCTACAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2439478 lncRNA downstream 8475 36894564 ~ 36900828 (-) False G2133445
TU2439473 lncRNA downstream 8475 36896507 ~ 36900828 (-) True G2133445
TU2439464 lncRNA downstream 20785 36888290 ~ 36888518 (-) True G2133441
TU2439454 lncRNA downstream 29360 36879581 ~ 36879943 (-) True G2133435
TU2439453 lncRNA downstream 31269 36877822 ~ 36878034 (-) True G2133434
TU2439492 lncRNA upstream 62 36909577 ~ 36909792 (-) True G2133453
TU2439498 lncRNA upstream 10342 36919857 ~ 36920871 (-) True G2133459
TU2439520 lncRNA upstream 54504 36964019 ~ 36964231 (-) True G2133481
TU2439522 lncRNA upstream 55672 36965187 ~ 36965469 (-) True G2133483
TU2439572 lncRNA upstream 110373 37019888 ~ 37020521 (-) True G2133531
XR_005040180.1 mRNA downstream 351771 36526794 ~ 36557532 (-) False LOC110509111
XM_036966342.1 mRNA upstream 91008 37000523 ~ 37001147 (-) True LOC118944834
XM_036965879.1 mRNA upstream 405096 37314611 ~ 37323106 (-) False impa1
XM_036965878.1 mRNA upstream 405096 37314611 ~ 37333488 (-) False impa1
XM_036965880.1 mRNA upstream 405096 37314611 ~ 37333488 (-) False impa1
NM_001160581.1 mRNA upstream 405102 37314617 ~ 37323052 (-) True impa1
TU2439020 other downstream 351850 36556500 ~ 36557453 (-) True LOC110509111
TU2438987 other downstream 645973 36263002 ~ 36263330 (-) True G2133007
TU2438933 other downstream 659528 36235515 ~ 36249775 (-) False G2132966
TU2438943 other downstream 659528 36238230 ~ 36249775 (-) True G2132966
TU2438948 other downstream 683924 36224213 ~ 36225379 (-) True G2132971
TU2440638 other upstream 857203 37766718 ~ 37939843 (-) True LOC110509127
TU2440825 other upstream 1218614 38128129 ~ 38130407 (-) True G2134625
TU2441345 other upstream 1610056 38519571 ~ 38526920 (-) True G2135034
TU2442402 other upstream 2095946 39005461 ~ 39006050 (-) True G2135837
TU2442821 other upstream 2894280 39803795 ~ 39829179 (-) True LOC110509145

Expression Profile