RNA id: TCONS_00005270


Basic Information

Item Value
RNA id TCONS_00005270
length 1489
RNA type mRNA
GC content 0.41
exon number 10
gene id XLOC_002842
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 29226180 ~ 29236860 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAACAACCCAAACATATCCGGAAAAGTATAAAGAAATAAAGTGGCTAAAGTAAAAAACGATTAAGAAAACGTTCGCGATTCAGGGCCAGGGGTGACGTTATTCAATTTCGTTTATAGAGACATAGACTTCTCTTTCCTCAGCCCTTTGAAAGATTGAGTAAAAGTTAAATGCTTCGTTTTTGATGTTAACGATGCGATGCAAATAACTTAATAGCATGAGTGAGAATGAGCAAGACAACAGACAAGACATCTCTAGCAGAGGCCTTCATACAGTTCCAAATTGAAATTAAAAGGAAAGAGATTCAAGATATTAAAGATGAGATACACCAACTAGAAGATAAGAGGCAAAAGCTGATGAAAGAGCAGGAGGAGCTGAGAGAAGAGCAGGCCAAACATGCGCGGGAACAGCGGAGACGGATGAAGGAGATGGAGGAAAACCTGGAGAAAAAAGAGCGGGAAGATCAAGAGCTGCTGAAGGAAACGACCCAAGAGAGCATGAAGCTAAAACACAAGCAAGAGAAAGAACTAGAAGAACTGTGCTGTAAGCTTGCAAGGCTGCAAGTTGAAGTGGAAAAACAGACAGGAGAACGAGACGCATGGCTGCAGTATAAGACCGAGGGTAGTATGAAAGACCAGCAAAAGATACAAAAACTGGAAAAACGAACCATTTTGTCACAAATAACTTTCCACGATATATCAGAACATTTTCAGAAATCTCTTGTTGTGGCTAAAGAAGAACAGCAGCAAAACCTTGCACAGAGTTTGGAGGAAAAAATTCAGTTCGCCACAACGAAAGAAACAGAATTACTTGATGAAGCCAGTATAACTGAGCTTCAAGAAACTGAGTGGCTAAAAGAACAGGTTCCGATATATATTGACAAAGTCACAGTATTGGAATCCATTGTCCAGAACTTACAAGAGGAGAACCTGAAACACATTAACACTCTTTCCCAAATAATCGATTCTCTAATCGGCACAGGCAATGAATTTCCTGTGCAATCTGCTAGCTTTGTGTCCCATGACACTCAGAGTGCGGATGAGAACATAATGAAAAAATGCCTTGAGGAAACATCAGAACTGCTCAATAGAGGCTTGTATCCCCACCAGACATTAGCAGAAGCTGAAGAGACACAACAGGAGAGCAGTGAGACGACATCACCTAGCACAACTCCATCTGACATCACAGAGATGTTCAACAGTCAGGCTAATTTCATGgGGCCGATACATCTGGGTCTGCTGAACGAGAGGCTGCTGCGTGTGGAAGGTAAAGCGTGTCCTCTGCATCCATCACAAGACCAGACAGAAAAGTGGAGCGTTACCACAAAGACCATCAAGGACAAGTTTCAAAATCCTGGAAAATCTGATGCACCTGTAAACGACACCTCTGAAATTCACCagtagttaaaaaaaacatttaaatgagtaCAAATACATTTATGTGAATGAGACATTTCAATacacaaaattataaataatatggaTAAAGATT

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-130723-1 Orthologous to human CCDC83 (coiled-coil domain containing 83).

Ensembl:

ensembl_id ENSDART00000111620

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005269 lncRNA downstream 88176 29128202 ~ 29138004 (-) True XLOC_002841
TCONS_00006074 lncRNA downstream 761154 28460213 ~ 28465026 (-) True XLOC_002834
TCONS_00005770 lncRNA downstream 808001 28417651 ~ 28418179 (-) True XLOC_002830
TCONS_00006073 lncRNA downstream 840611 28382085 ~ 28385569 (-) True XLOC_002828
TCONS_00006072 lncRNA downstream 840626 28382085 ~ 28385554 (-) False XLOC_002828
TCONS_00006075 lncRNA upstream 29410 29266270 ~ 29491087 (-) True XLOC_002843
TCONS_00005294 lncRNA upstream 2025992 31262852 ~ 31294777 (-) False XLOC_002858
TCONS_00006076 lncRNA upstream 2025992 31262852 ~ 31295006 (-) True XLOC_002858
TCONS_00006077 lncRNA upstream 2840951 32077811 ~ 32084121 (-) False XLOC_002862
TCONS_00006078 lncRNA upstream 2840951 32077811 ~ 32084624 (-) True XLOC_002862
TCONS_00005268 mRNA downstream 105645 29113437 ~ 29120535 (-) True XLOC_002840
TCONS_00005267 mRNA downstream 105665 29112756 ~ 29120515 (-) False XLOC_002840
TCONS_00005265 mRNA downstream 124331 29087810 ~ 29101849 (-) False XLOC_002839
TCONS_00005264 mRNA downstream 124331 29087810 ~ 29101849 (-) False XLOC_002839
TCONS_00005266 mRNA downstream 124465 29094277 ~ 29101715 (-) True XLOC_002839
TCONS_00005272 mRNA upstream 33138 29269998 ~ 29272757 (-) False XLOC_002844
TCONS_00005271 mRNA upstream 33138 29269998 ~ 29272757 (-) True XLOC_002844
TCONS_00005274 mRNA upstream 494200 29731060 ~ 29733194 (-) True XLOC_002846
TCONS_00005275 mRNA upstream 499040 29735900 ~ 29744921 (-) False XLOC_002847
TCONS_00005277 mRNA upstream 514169 29751029 ~ 29768556 (-) True XLOC_002848
TCONS_00005263 other downstream 302547 28923517 ~ 28923633 (-) True XLOC_002838
TCONS_00005262 other downstream 303929 28922135 ~ 28922251 (-) True XLOC_002837
TCONS_00005252 other downstream 771009 28454500 ~ 28455171 (-) True XLOC_002833
TCONS_00005251 other downstream 777312 28447906 ~ 28448868 (-) True XLOC_002832
TCONS_00005250 other downstream 782440 28442740 ~ 28443740 (-) True XLOC_002831
TCONS_00005273 other upstream 471208 29708068 ~ 29708182 (-) True XLOC_002845
TCONS_00005276 other upstream 499326 29736186 ~ 29739108 (-) True XLOC_002847
TCONS_00005286 other upstream 1294283 30531143 ~ 30531257 (-) True XLOC_002854
TCONS_00005293 other upstream 1784496 31021356 ~ 31104754 (-) True XLOC_002857
TCONS_00005308 other upstream 3305676 32542536 ~ 32610769 (-) False XLOC_002866

Expression Profile

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