RNA id: TU2439498


Basic Information

Item Value
RNA id TU2439498
length 349
lncRNA type intronic
GC content 0.56
exon number 2
gene id G2133459
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 36919857 ~ 36920871 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACTCCTCCAGTCTCTGTGTTACTCCTCCAGTCTCTGTGTTACTCCTCCAGTCTCTGGGCTACTCCTCCAGTCTCTGGGATGCTCCTCCAGTCTCTGGGATGCTCCTCCAGTCTCTGTGTTACTCCTCCAGTCTCTGGGCTACTCCTCCAGTCTCTGGGATGCTCCTCCAGTCTCTGGGATGATCCTCCAGTCTCTGGGCTACTCCTCCAGTATCTGGGCTGCTCCTCCAGTCTCTGGGTTACTCCTCCAGTCTCTGGGTTACTCCACCAGTCTCTGTGTTACTCCTCCAATCTCTGGGTTACTCCTCCAGTCTCTGGGCTACTCCTCCAGTCTCTGGGATGCTCCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2439492 lncRNA downstream 10065 36909577 ~ 36909792 (-) True G2133453
TU2439491 lncRNA downstream 10342 36909303 ~ 36909515 (-) True G2133452
TU2439478 lncRNA downstream 19029 36894564 ~ 36900828 (-) False G2133445
TU2439473 lncRNA downstream 19029 36896507 ~ 36900828 (-) True G2133445
TU2439464 lncRNA downstream 31339 36888290 ~ 36888518 (-) True G2133441
TU2439520 lncRNA upstream 43148 36964019 ~ 36964231 (-) True G2133481
TU2439522 lncRNA upstream 44316 36965187 ~ 36965469 (-) True G2133483
TU2439572 lncRNA upstream 99017 37019888 ~ 37020521 (-) True G2133531
TU2439585 lncRNA upstream 110782 37031653 ~ 37031856 (-) True G2133542
TU2439597 lncRNA upstream 119746 37040617 ~ 37040853 (-) True G2133554
XR_005040180.1 mRNA downstream 362325 36526794 ~ 36557532 (-) False LOC110509111
XM_036966342.1 mRNA upstream 79652 37000523 ~ 37001147 (-) True LOC118944834
XM_036965879.1 mRNA upstream 393740 37314611 ~ 37323106 (-) False impa1
XM_036965878.1 mRNA upstream 393740 37314611 ~ 37333488 (-) False impa1
XM_036965880.1 mRNA upstream 393740 37314611 ~ 37333488 (-) False impa1
NM_001160581.1 mRNA upstream 393746 37314617 ~ 37323052 (-) True impa1
TU2439020 other downstream 362404 36556500 ~ 36557453 (-) True LOC110509111
TU2438987 other downstream 656527 36263002 ~ 36263330 (-) True G2133007
TU2438933 other downstream 670082 36235515 ~ 36249775 (-) False G2132966
TU2438943 other downstream 670082 36238230 ~ 36249775 (-) True G2132966
TU2438948 other downstream 694478 36224213 ~ 36225379 (-) True G2132971
TU2440638 other upstream 845847 37766718 ~ 37939843 (-) True LOC110509127
TU2440825 other upstream 1207258 38128129 ~ 38130407 (-) True G2134625
TU2441345 other upstream 1598700 38519571 ~ 38526920 (-) True G2135034
TU2442402 other upstream 2084590 39005461 ~ 39006050 (-) True G2135837
TU2442821 other upstream 2882924 39803795 ~ 39829179 (-) True LOC110509145

Expression Profile