RNA id: TU2439826


Basic Information

Item Value
RNA id TU2439826
length 433
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G2133766
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 37223227 ~ 37223750 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gccagtgttctgttcaggagagagagatttgctgggaTgtcattgcagagcgattgtttgtgatagagagatttgcttggaggtcattgcagagagattttgctagaggttgattttgctgggagttcattgctgagagctggtatgttctgtgagtttgttgctcaggtagagcttatttgatgtcctttgtttcttagtttgtttgtgaaattgtttaatattctgtttcatttgttcccaggggggaaggggaaggcaccttgggagtgtttaggcaagaggcccgcgggcatacatatacccgtagtatattcactgtctaggcacactaggtaagacctgggcggaccaccccctgtattttggttagggcaccaggtggtgctaaattaggtaaaagtggttaggcaggtaagataggagagggggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2439711 lncRNA downstream 94284 37127428 ~ 37128943 (-) True G2133664
TU2439613 lncRNA downstream 169467 37053540 ~ 37053760 (-) True G2133570
TU2439597 lncRNA downstream 182374 37040617 ~ 37040853 (-) True G2133554
TU2439585 lncRNA downstream 191371 37031653 ~ 37031856 (-) True G2133542
TU2439572 lncRNA downstream 202706 37019888 ~ 37020521 (-) True G2133531
TU2439856 lncRNA upstream 35105 37258855 ~ 37292749 (-) True G2133793
TU2439869 lncRNA upstream 72564 37296314 ~ 37296514 (-) True G2133806
TU2440019 lncRNA upstream 104867 37328617 ~ 37328828 (-) True G2133941
TU2440051 lncRNA upstream 163285 37387035 ~ 37388318 (-) True G2133972
TU2440058 lncRNA upstream 173691 37397441 ~ 37398302 (-) True G2133978
XM_036966342.1 mRNA downstream 222080 37000523 ~ 37001147 (-) True LOC118944834
XM_036966569.1 mRNA downstream 264516 36798445 ~ 36958711 (-) False LOC110509116
XR_005040182.1 mRNA downstream 665695 36526794 ~ 36557532 (-) False LOC110509111
XM_036965879.1 mRNA upstream 90861 37314611 ~ 37323106 (-) False impa1
XM_036965878.1 mRNA upstream 90861 37314611 ~ 37333488 (-) False impa1
XM_036965880.1 mRNA upstream 90861 37314611 ~ 37333488 (-) False impa1
NM_001160581.1 mRNA upstream 90867 37314617 ~ 37323052 (-) True impa1
XM_021590087.2 mRNA upstream 113775 37337525 ~ 37425195 (-) False fbxl7
TU2439020 other downstream 665774 36556500 ~ 36557453 (-) True LOC110509111
TU2438987 other downstream 959897 36263002 ~ 36263330 (-) True G2133007
TU2438933 other downstream 973452 36235515 ~ 36249775 (-) False G2132966
TU2438943 other downstream 973452 36238230 ~ 36249775 (-) True G2132966
TU2438948 other downstream 997848 36224213 ~ 36225379 (-) True G2132971
TU2440638 other upstream 542968 37766718 ~ 37939843 (-) True LOC110509127
TU2440825 other upstream 904379 38128129 ~ 38130407 (-) True G2134625
TU2441345 other upstream 1295821 38519571 ~ 38526920 (-) True G2135034
TU2442402 other upstream 1781711 39005461 ~ 39006050 (-) True G2135837
TU2442821 other upstream 2580045 39803795 ~ 39829179 (-) True LOC110509145

Expression Profile