RNA id: TU2440060


Basic Information

Item Value
RNA id TU2440060
length 2344
lncRNA type intronic
GC content 0.45
exon number 2
gene id G2133980
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 37400347 ~ 37402768 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttgactctgtacctgtaccccctgtatatagcctccacattgactctgtaccggtaccccctgtatataacctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccggtacccctgtatatagcctccacattgactctgtaccggtacccactgtatatagcctccacattgactctgtaccataataccctgtatatagcctccacattgactctgtaccataataccctgtatatagcctccacattgactctgtaccagtaccccctgtatatagcctccacattgactctgtaccataataccctgtatatagcctccacattgactctgtaccataataccctgtatatagcctccacattgactctgtaccataataccctgtatatagcctccacattgactctgtaccggtacccactgtatatagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccagtaccccctgtatatagcctccacattgactctgtaccagtaccccttgtatatagcctccacattgactctgtaccggtaccccctgtatataacctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccagtaccccttgtatatagcctccacattgactctgtaccagtaccccctgtatataacctccatattgactctgtaccataacaccctgtatatagcctccacattgactctgtaccagtaccccctgtatatagcctccacattgactctgtaccataacaccctgtatatagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccataataccctgtatatagcctccacattgactctgtaccctaacaccctgtatatagcctccacattgactctgtaccagtaccccctgtatatagcctccacattgactctgtaccctaacaccctgtatatagcctccacattgactatataccagtaccccctgtatatagcctccacattgactctgtaccataataccctgtatatagcctccacattgactctgtaccataataccctgtatatagcctccacattgactctgtaccagtaccccctgtatatagcctccacattgactctgtaccataataccctgtatatagcctccacattgactctgtaccataataccctgtatatagcctccacattgactctgtaccgtaacaccctgtatatagcctccacattgactctgtaccgtaacaccctgtatatagcctccacattgactctgtaccgtaacaccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtaccagtaccccctgtatatagcctccacattgactctataccgtaataccctgtatatagccgccacattgactctgtaccgtaacaccctgtatatagcctccacattgactctgtaccgtaacaccctgtatatagcctccacattgactctgtaccgtaatactctgtatatagcctccacattgactctgtaccgtaacaccctgtatatagcctccactttgactctgtaccgtaacaccctgtatatagcctccacattgactctgtaccgtaacaccctgtatatagcctccacattgactctgtaccgtaatactctgtatatagcctccacattgactctgtaccgtaacaccctgtatatagcctccacattgactctgtaccgtaacaccctgtacatagcctccacattgactctgtaccgtaatactctgtatatagcctccacattgactgtaccgtaatactctgtatatagcctccatattgactctgtaccgtaacaccctgtatatagcctccacattgactctgtaccgtaatactctgtatatagcctccacattgactctgtaccgtaacaccctgtatatagcctccacattgactctgtaccgtaatactctgtatatatcctccacattgactctgtaccgtaatactctgtatatagcctccacattgcctctgtaccgtaataccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagcctccacattgcctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2440058 lncRNA downstream 2045 37397441 ~ 37398302 (-) True G2133978
TU2440051 lncRNA downstream 12029 37387035 ~ 37388318 (-) True G2133972
TU2440019 lncRNA downstream 71519 37328617 ~ 37328828 (-) True G2133941
TU2439869 lncRNA downstream 103833 37296314 ~ 37296514 (-) True G2133806
TU2439856 lncRNA downstream 107598 37258855 ~ 37292749 (-) True G2133793
TU2440139 lncRNA upstream 121027 37523795 ~ 37524007 (-) True G2134047
TU2440262 lncRNA upstream 171292 37574060 ~ 37665953 (-) True G2134142
TU2440248 lncRNA upstream 178238 37581006 ~ 37645494 (-) True LOC110509123
TU2440307 lncRNA upstream 235686 37638454 ~ 37638941 (-) True G2134176
TU2440257 lncRNA upstream 245270 37648038 ~ 37691239 (-) True G2134137
XM_036965878.1 mRNA downstream 66859 37314611 ~ 37333488 (-) False impa1
XM_036965880.1 mRNA downstream 66859 37314611 ~ 37333488 (-) False impa1
XM_036965879.1 mRNA downstream 77241 37314611 ~ 37323106 (-) False impa1
NM_001160581.1 mRNA downstream 77295 37314617 ~ 37323052 (-) True impa1
XM_036966342.1 mRNA downstream 399200 37000523 ~ 37001147 (-) True LOC118944834
XM_021590091.2 mRNA upstream 68688 37471456 ~ 37473548 (-) True LOC110509120
XM_021590092.2 mRNA upstream 144044 37546812 ~ 37561210 (-) True inhbab
XM_036966375.1 mRNA upstream 175940 37578708 ~ 37604880 (-) False LOC110509123
XM_036966776.1 mRNA upstream 363602 37766370 ~ 37995058 (-) False LOC110509127
XM_036966775.1 mRNA upstream 363602 37766370 ~ 37996222 (-) False LOC110509127
TU2439020 other downstream 842894 36556500 ~ 36557453 (-) True LOC110509111
TU2438987 other downstream 1137017 36263002 ~ 36263330 (-) True G2133007
TU2438933 other downstream 1150572 36235515 ~ 36249775 (-) False G2132966
TU2438943 other downstream 1150572 36238230 ~ 36249775 (-) True G2132966
TU2438948 other downstream 1174968 36224213 ~ 36225379 (-) True G2132971
TU2440638 other upstream 363950 37766718 ~ 37939843 (-) True LOC110509127
TU2440825 other upstream 725361 38128129 ~ 38130407 (-) True G2134625
TU2441345 other upstream 1116803 38519571 ~ 38526920 (-) True G2135034
TU2442402 other upstream 1602693 39005461 ~ 39006050 (-) True G2135837
TU2442821 other upstream 2401027 39803795 ~ 39829179 (-) True LOC110509145

Expression Profile