RNA id: TU2440679


Basic Information

Item Value
RNA id TU2440679
length 2636
lncRNA type intronic
GC content 0.36
exon number 2
gene id G2134486
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 37803024 ~ 37837227 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaccagctagatctactggctctattatattatgacagaccagctagatctactgtctatattatattatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctctaatatattatgacagaccagctagatctactgtctctgttatattgtgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctatattatattatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctctatattatgacagaccagctagatctactgtctctattatattataacagaccagctagatctactggctctattatattatgacagaccagctagatctactgtctctattataatatgacagaccagctagatctactgtctctattatattatgacagaccaggacatactctggagctagatctactgtctctatattatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctaccgtctctattatattatgacagaccagctagatctactgtctctattatattatgacagaccagctagatatactgtctctattatattatgacagaccagctagatctactgtctctattatattatgacaggccagctagatctactgtctctattatatcatgacagaccagctagatctactgtctctattatattatgacagaccagctagatatactgtctctattatattatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctctattatatcatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctctgttatattgtgacagaccagctagatctactgtctctgttatattatgacagaccagctatatctactgtctctattatattatgacagaccagctagatctactgtctgtattatattatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctctattgtattatggcagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtatctattgtattatgacagaccagctagatctactgtctctattatattatgccagaccagctagatctactgtctctattatactatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactctctctattatattatgacagaccagctagatctactgtctcggttatattgtgaaagaccagctagatctactgtctctgttatattatgacagaccagctagatcttctgtctctaatatattatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactatctctattatattatgacagaccagctagatctactgtctctgttatattatgccagaccagctagatctactgtctctattatattataacagaccagctagatctactggctctattatattatgacagaccagctagatctactgtctatattatattatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctctatattatgacagaccagctagatctactgtctctattatattataacagaccagctagatctactggctctattatattatgacagaccagctagatctactgtctctattataatatgacagaccagctagatctactgtctctattatattatgacagaccaggacatactctggagctagatctactgtctctatattatgacagtccagctagatctactgtctctattatattatgacagaccagctagatctaccgtctctattatattatgacagaccagctagatctactgtctctattatattatgacagaccagctagatatactgtctctattatattatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctctattatatcatgacagagcagctagatctactgtctctattatattatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctctgttatattgtgacagaccagctagatctactgtctctgttatattatgacagaccagctatatctactgtctctattatattatgacagaccagctagatctactgtctgtattatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2440392 lncRNA downstream 44045 37760124 ~ 37760694 (-) True G2134261
TU2440387 lncRNA downstream 47014 37757372 ~ 37757725 (-) True G2134256
TU2440385 lncRNA downstream 50672 37753375 ~ 37754067 (-) True G2134254
TU2440348 lncRNA downstream 104794 37699678 ~ 37699945 (-) True G2134217
TU2440340 lncRNA downstream 109110 37695423 ~ 37695629 (-) True G2134209
TU2440668 lncRNA upstream 3050 37815556 ~ 37837227 (-) True G2134486
TU2440682 lncRNA upstream 30133 37842639 ~ 37847057 (-) True G2134489
TU2440683 lncRNA upstream 37792 37850298 ~ 37854377 (-) True G2134490
TU2440685 lncRNA upstream 43319 37855825 ~ 37858565 (-) True G2134492
TU2440690 lncRNA upstream 47822 37860328 ~ 37861383 (-) True G2134496
XM_036966375.1 mRNA downstream 199859 37578708 ~ 37604880 (-) False LOC110509123
XM_021590092.2 mRNA downstream 243529 37546812 ~ 37561210 (-) True inhbab
XM_021590091.2 mRNA downstream 331191 37471456 ~ 37473548 (-) True LOC110509120
XM_036966595.1 mRNA downstream 333895 37337525 ~ 37470844 (-) True fbxl7
XM_021590087.2 mRNA downstream 379544 37337525 ~ 37425195 (-) False fbxl7
XM_036966303.1 mRNA upstream 762211 38574717 ~ 38625443 (-) False LOC110509132
XM_036966302.1 mRNA upstream 762211 38574717 ~ 38625444 (-) False LOC110509132
XM_036966304.1 mRNA upstream 762211 38574717 ~ 38637568 (-) False LOC110509132
XM_036966300.1 mRNA upstream 762211 38574717 ~ 38644749 (-) False LOC110509132
XM_036966299.1 mRNA upstream 762211 38574717 ~ 38644750 (-) True LOC110509132
TU2439020 other downstream 1247286 36556500 ~ 36557453 (-) True LOC110509111
TU2438987 other downstream 1541409 36263002 ~ 36263330 (-) True G2133007
TU2438933 other downstream 1554964 36235515 ~ 36249775 (-) False G2132966
TU2438943 other downstream 1554964 36238230 ~ 36249775 (-) True G2132966
TU2438948 other downstream 1579360 36224213 ~ 36225379 (-) True G2132971
TU2440825 other upstream 315623 38128129 ~ 38130407 (-) True G2134625
TU2441345 other upstream 707065 38519571 ~ 38526920 (-) True G2135034
TU2442402 other upstream 1192955 39005461 ~ 39006050 (-) True G2135837
TU2442821 other upstream 1991289 39803795 ~ 39829179 (-) True LOC110509145
TU2442908 other upstream 2130647 39943153 ~ 39945834 (-) True G2136189

Expression Profile