RNA id: TU2440690



Basic Information


Item Value
RNA id TU2440690
length 295
lncRNA type intronic
GC content 0.47
exon number 3
gene id G2134496
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 37860328 ~ 37861383 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATAAGGTGCTATAACAGCCCAACACTGAGGAATAAGGTGCTATAGAGGAATGAGGTGCTATAGAGGAATAAGGTGCTATAGCAGCCCAACACTGAGGAATAAGGTGCTATAGAGGAATAAGGTGCTATAGCAGCCCAACACTGAGGAATAAGGTGCTATAGCCAGACCAACACTGGGCAGGTGGGAGGCCCTATGTTCTTCCTGGTGAATCAAACAAAGCTTTGGAGTCTGTACGACAGTGAAGATGCTGGTGGCGTGCTCTCAGTGTTTGATGATGTTAGCGGTGTACTGTTGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2440685 lncRNA downstream 1763 37855825 ~ 37858565 (-) True G2134492
TU2440683 lncRNA downstream 5951 37850298 ~ 37854377 (-) True G2134490
TU2440682 lncRNA downstream 13271 37842639 ~ 37847057 (-) True G2134489
TU2440671 lncRNA downstream 23101 37807077 ~ 37837227 (-) False G2134486
TU2440668 lncRNA downstream 23101 37815556 ~ 37837227 (-) True G2134486
TU2440698 lncRNA upstream 13429 37874812 ~ 37882010 (-) True G2134502
TU2440699 lncRNA upstream 13929 37875312 ~ 37883306 (-) True G2134503
TU2440719 lncRNA upstream 49631 37911014 ~ 37941146 (-) True G2134522
TU2440745 lncRNA upstream 108732 37970115 ~ 37970347 (-) True G2134546
TU2440747 lncRNA upstream 110044 37971427 ~ 37971633 (-) True G2134548
XM_036966375.1 mRNA downstream 255448 37578708 ~ 37604880 (-) False LOC110509123
XM_021590092.2 mRNA downstream 299118 37546812 ~ 37561210 (-) True inhbab
XM_021590091.2 mRNA downstream 386780 37471456 ~ 37473548 (-) True LOC110509120
XM_036966595.1 mRNA downstream 389484 37337525 ~ 37470844 (-) True fbxl7
XM_021590087.2 mRNA downstream 435133 37337525 ~ 37425195 (-) False fbxl7
XM_036966303.1 mRNA upstream 713334 38574717 ~ 38625443 (-) False LOC110509132
XM_036966302.1 mRNA upstream 713334 38574717 ~ 38625444 (-) False LOC110509132
XM_036966304.1 mRNA upstream 713334 38574717 ~ 38637568 (-) False LOC110509132
XM_036966300.1 mRNA upstream 713334 38574717 ~ 38644749 (-) False LOC110509132
XM_036966299.1 mRNA upstream 713334 38574717 ~ 38644750 (-) True LOC110509132
TU2439020 other downstream 1302875 36556500 ~ 36557453 (-) True LOC110509111
TU2438987 other downstream 1596998 36263002 ~ 36263330 (-) True G2133007
TU2438933 other downstream 1610553 36235515 ~ 36249775 (-) False G2132966
TU2438943 other downstream 1610553 36238230 ~ 36249775 (-) True G2132966
TU2438948 other downstream 1634949 36224213 ~ 36225379 (-) True G2132971
TU2440825 other upstream 266746 38128129 ~ 38130407 (-) True G2134625
TU2441345 other upstream 658188 38519571 ~ 38526920 (-) True G2135034
TU2442402 other upstream 1144078 39005461 ~ 39006050 (-) True G2135837
TU2442821 other upstream 1942412 39803795 ~ 39829179 (-) True LOC110509145
TU2442908 other upstream 2081770 39943153 ~ 39945834 (-) True G2136189

Expression Profile