RNA id: TU2440825


Basic Information

Item Value
RNA id TU2440825
length 2086
RNA type TUCP
GC content 0.41
exon number 3
gene id G2134625
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 38128129 ~ 38130407 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcttgaagTAACCCATGACTggaaactgtcatggtcaaaataaTATTGATATAACAGTAGCTAGGATgaggagaagtctgtccataataaaggcgctgctctaccttcttaattaacagcactatcaacaacgcaggtcctacaggctctagtttctaccttcttaacaacactatcaacaaggcaggtcctacaggctctattttctaccttcttaacaacacgatcaacaaggcaggtcctacaggccctagtttctaccttcttaacagtactatcaacaaggcaggtcctacaggccctagttttgtcgcaccttgactactgttcagtcgtgcgGTCAGGTGACACAAAGAGGAAAAATGCAATtagctcagaacagggcagcacagctggcccttacatgtacacagagagcaaCCACTAATAATATGCACGTCAATCTCTCCTGcatcaaagtggaggagagattgacttcatcactacttgtatttgtgagaggtattgacatgttgattGCACTTTGCTGTCTGTTTAAACGACTAGCACACaactcggacacccatgcataccccacaagacatataACCAGGggtttcttcacagtccccaagtccagaacagactatgggaaacacacagtactacatagagccatgactacatgggactctattccacagtactacatagagccaagactacatggaactctattccacagtactacatagagccatgactacatggaactctattccacagtactacatagagccatgactacatggaactctattccacagtactacatagagccatgactacatggaactctattccacagtactacatagagccatgactacatggaactctattccacagtactacatagagccaagactacatggaactctattccacagtactacatagagccacgactacatggaactctattccacagtactacatagagccatgactacatggaactctattccacagtactacatagagccataactaTACAAAACTCttttccacagtactacatagagccatgactacatggaactctattccacagtactacatagagccataactatacaaaactctattccacagtactacatagagccatgactacatggaactctattccacagtactacatagagccatgactacatggaactctattccacagtactacatagagccatgactacatggaactctattccacagtactacatagagccatgactacatggaactctattccacagtactacatagagccatgactacatggaactctattccacagtactacatagagccatgactacatggaactctattccacagtactacatagagccataactaTACAAAACTCttttccacagtactacatagagccatgactacatggaactctattccacagtactacatagagccataactaTACAAAACTCttttccacagtactacatagagccatgactacatggaactctattccacagtactacatagagccataactatacaaaactctattccacagtactacatagagccatgactacatggaactctattccacagtactacatagagccatgactacatggaactctattccacagtactacatagagccatgactacatggaactctattccacagtactacatagagccatgactacatggaactctattctacagtactacatagagccataactaTACAAAACTCttttccacagtactacatagagccataactaTACAAAACTCttttccacagtactacatagagccataactaTACAAAACTCttttccacagtactacatagagccataactatacaaaactctattccacagtactacatagagccataactaTAGAAAACTCttttccacatcaggtaactgatgaaagcagtagaatcagatattttttttttttttgcgtatAAAAATACTCCTTaaggaacagcggggactgtgaagcaacacaaacatgggcacagacacatgcacacacacacacacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2440800 lncRNA downstream 43951 38073052 ~ 38084178 (-) True G2134600
TU2440781 lncRNA downstream 44278 38035982 ~ 38083851 (-) True G2134582
TU2440777 lncRNA downstream 96092 38031423 ~ 38032037 (-) True G2134578
TU2440747 lncRNA downstream 156496 37971427 ~ 37971633 (-) True G2134548
TU2440745 lncRNA downstream 157782 37970115 ~ 37970347 (-) True G2134546
TU2440838 lncRNA upstream 18182 38148589 ~ 38148792 (-) True G2134638
TU2440858 lncRNA upstream 42917 38173324 ~ 38173571 (-) True G2134658
TU2441169 lncRNA upstream 47845 38178252 ~ 38179595 (-) False G2134883
TU2441171 lncRNA upstream 47845 38178252 ~ 38184787 (-) True G2134883
TU2441188 lncRNA upstream 80593 38211000 ~ 38232889 (-) False G2134897
XM_036966775.1 mRNA downstream 131907 37766370 ~ 37996222 (-) False LOC110509127
XM_036966776.1 mRNA downstream 133071 37766370 ~ 37995058 (-) False LOC110509127
XM_036966375.1 mRNA downstream 523249 37578708 ~ 37604880 (-) False LOC110509123
XM_021590092.2 mRNA downstream 566919 37546812 ~ 37561210 (-) True inhbab
XM_021590091.2 mRNA downstream 654581 37471456 ~ 37473548 (-) True LOC110509120
XM_036966303.1 mRNA upstream 444310 38574717 ~ 38625443 (-) False LOC110509132
XM_036966302.1 mRNA upstream 444310 38574717 ~ 38625444 (-) False LOC110509132
XM_036966304.1 mRNA upstream 444310 38574717 ~ 38637568 (-) False LOC110509132
XM_036966300.1 mRNA upstream 444310 38574717 ~ 38644749 (-) False LOC110509132
XM_036966299.1 mRNA upstream 444310 38574717 ~ 38644750 (-) True LOC110509132
TU2440638 other downstream 188286 37766718 ~ 37939843 (-) True LOC110509127
TU2439020 other downstream 1570676 36556500 ~ 36557453 (-) True LOC110509111
TU2438987 other downstream 1864799 36263002 ~ 36263330 (-) True G2133007
TU2438933 other downstream 1878354 36235515 ~ 36249775 (-) False G2132966
TU2438943 other downstream 1878354 36238230 ~ 36249775 (-) True G2132966
TU2441345 other upstream 389164 38519571 ~ 38526920 (-) True G2135034
TU2442402 other upstream 875054 39005461 ~ 39006050 (-) True G2135837
TU2442821 other upstream 1673388 39803795 ~ 39829179 (-) True LOC110509145
TU2442908 other upstream 1812746 39943153 ~ 39945834 (-) True G2136189
TU2442946 other upstream 1860156 39990563 ~ 39997046 (-) True LOC110508256

Expression Profile