RNA id: TU2441240



Basic Information


Item Value
RNA id TU2441240
length 318
lncRNA type intronic
GC content 0.42
exon number 2
gene id G2134945
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 38309166 ~ 38312016 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ctgtcacgttctgaccatcgttcgtgtgtgttttccttgttttagtgttggtcaggacgtgaactgggtgggcattctatgttggatgtcttgtttgtctatttctatgtccggcctgatatggttctcaatcagaggcaggtgttagtcattgtctctgattgggaaccatatttaggtagcctgggtttcactgtgtgtttgtgggtgattgtccttagtgttactttgcaccagtttaggctgtttcggttttcattacgtttattattttgcactgtttgtatttggattcatgttgctatagtcacaataaac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2441216 lncRNA downstream 45659 38263201 ~ 38263507 (-) True G2134921
TU2441203 lncRNA downstream 58728 38250156 ~ 38250438 (-) True G2134910
TU2441202 lncRNA downstream 59612 38249322 ~ 38249554 (-) True G2134909
TU2441199 lncRNA downstream 65673 38243206 ~ 38243493 (-) True G2134906
TU2441188 lncRNA downstream 76277 38211000 ~ 38232889 (-) False G2134897
TU2441260 lncRNA upstream 32765 38344781 ~ 38346055 (-) True G2134965
TU2441297 lncRNA upstream 118014 38430030 ~ 38430506 (-) True G2135001
TU2441308 lncRNA upstream 138885 38450901 ~ 38453008 (-) True G2135011
TU2441311 lncRNA upstream 142729 38454745 ~ 38455838 (-) True G2135013
TU2441334 lncRNA upstream 188868 38500884 ~ 38508083 (-) False G2135031
XM_036966775.1 mRNA downstream 312944 37766370 ~ 37996222 (-) False LOC110509127
XM_036966776.1 mRNA downstream 314108 37766370 ~ 37995058 (-) False LOC110509127
XM_036966375.1 mRNA downstream 704286 37578708 ~ 37604880 (-) False LOC110509123
XM_021590092.2 mRNA downstream 747956 37546812 ~ 37561210 (-) True inhbab
XM_021590091.2 mRNA downstream 835618 37471456 ~ 37473548 (-) True LOC110509120
XM_036966303.1 mRNA upstream 262701 38574717 ~ 38625443 (-) False LOC110509132
XM_036966302.1 mRNA upstream 262701 38574717 ~ 38625444 (-) False LOC110509132
XM_036966304.1 mRNA upstream 262701 38574717 ~ 38637568 (-) False LOC110509132
XM_036966300.1 mRNA upstream 262701 38574717 ~ 38644749 (-) False LOC110509132
XM_036966299.1 mRNA upstream 262701 38574717 ~ 38644750 (-) True LOC110509132
TU2440825 other downstream 178759 38128129 ~ 38130407 (-) True G2134625
TU2440638 other downstream 369323 37766718 ~ 37939843 (-) True LOC110509127
TU2439020 other downstream 1751713 36556500 ~ 36557453 (-) True LOC110509111
TU2438987 other downstream 2045836 36263002 ~ 36263330 (-) True G2133007
TU2438943 other downstream 2059391 36238230 ~ 36249775 (-) True G2132966
TU2441345 other upstream 207555 38519571 ~ 38526920 (-) True G2135034
TU2442402 other upstream 693445 39005461 ~ 39006050 (-) True G2135837
TU2442821 other upstream 1491779 39803795 ~ 39829179 (-) True LOC110509145
TU2442908 other upstream 1631137 39943153 ~ 39945834 (-) True G2136189
TU2442946 other upstream 1678547 39990563 ~ 39997046 (-) True LOC110508256

Expression Profile