RNA id: TCONS_00055749


Basic Information

Item Value
RNA id TCONS_00055749
length 1789
RNA type mRNA
GC content 0.37
exon number 5
gene id XLOC_028763
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 21648010 ~ 21652812 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCTTCCTTATTTTGCCAAAGAAACATAAGTATTATTAAATACTTACATTAAAAGTTGTTGTTTGTTGTCAAATTGTGGACTGTAATTTTGAAGTGAGAACTGTCGCAAATACTTTTTCACGAAAGCATGTGTTTACGACAGCGCCCCTGCTTCTGGGCTCAGGAAACCCTTGTGCGGCCTTTCCGAACAGCGCTCGGTATCTGAAAGGTGCGTCTGCAAGTCCTTCTCCATAGTGCAGTCAATTAAAGATTAATTTCATCTCAAAGTAAACGTTATCTATTCTGTCTTTGTTTCAGAATCATGCCGGCTAAAGGTCCCCTACAGTCTGTCCAGGTTTTTGGACGTAAAAAAACAGCTACTGCTGTCGCCCACTGCAAGAGGGGAAATGGGCTTATTAAAGTCAACGGAAGACCCCTTGAGATGATTGAGCCCGTCACTCTGCAGTACAAGctgCTGGAGCCTCTTCTGCTGCTGGGTAAGGAGCGCTTCGCTGGCGTGGACATCAGAGTCCGTGTGAAGGGTGGTGGACACGTCGCTCAGGTCTACGCCATCCGTCAGGCCATCTCCAAAGCCCTGGTTGCCTATTATCAGAAATATGTGGATGAGGCCTCCAAGAAAGAGATCAAGGATATCTTAATTCAGTACGACAGGACCCTGCTGGTTGCTGATCCCCGCCGCTGCGAGTCCAAGAAGTTTGGTGGACCTGGAGCTCGTGCTCGCTACCAGAAATCCTACCGTTAAAATCTCTCTGTACATTttcatataataaatttaaagggGGAAAACATGCTGTAgtcttgttgtttttattaaaactacttGTAGTTTTGAGTTTATTTACTGCAGAAAAGCGCTAAACTGTCGTTCAATTATTTGTGTACCAAATATTTTTAAGGCAAATTTAGAATAAGATTTAATTTGGTGACATTGTGTGTGTAAAGATCACAGAGCAGTCCCAAGTCACTcagttgttatttaaaaaatctatacaTGCTCTCTATACTTCAAAACACTGGTGTTTACTCCTTTTTCAGTAggaaatgaatcatttgaaacacATTTAGTATAGCCTCTTGttatattgattttaataagCACAAGCATAGATTAAGCATCTGTTCTTTTGTATTATAACACTTGGTAGTTTGGTGTAGACCACAATATTGGATATCTCATTTTTGACTCATTGGCTGTGAAAGAAGAGATATGAAAAATCTGCAAACTTGATTAAATGCAGACAATATTTCTTCTAGACAGAAATAGCCTTGATTGCTGACATGGCAATCAATAAAAGTACATTACATCACATTCTAGAACAAATGTATGCTAATAGCTGTGATGTGATTTTGATTTTTACAATGCTAGGATATACTAAGATAATTAATTGGAGGTTTATACAACAACCTTTAGAAAAAAGTTTTGGTTTGGTTCAGatttttctagtaaaatattcagAAGAATGATATAAAAAGCAGCTACTGATGAGGTCAAAATGTACCATGGTATTTCCATTCAATATATCTTTTTTGTTCAATAGATGAAAAAGGAACAAGTGCAGAGTAAATGACTGTTTGAATGAACTACCCCTTTACAATAAGTGGGATGGGTTTTTTTTAATACAAGAGGGCAGTAGTCCGATTTTGGTGGTGTGTTTGAATTAGAAAGTTTAGTTGGATATTAAAATGAGATTTTCCTGTACCATAATCCAATTCATTTagtaaaagttaaataataacgAAAATAAGTAGTCATTGATTGCTTCTCCACTTAATCTAAATCTAAACCAG

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03010 Ribosome
ko05171 Coronavirus disease - COVID-19
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-050506-107 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human RPS16 (ribosomal protein S16).

Ensembl:

ensembl_id ENSDART00000174400

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058203 lncRNA downstream 18 21634012 ~ 21647992 (-) False XLOC_028762
TCONS_00055748 lncRNA downstream 423 21642885 ~ 21647587 (-) False XLOC_028762
TCONS_00055747 lncRNA downstream 423 21642885 ~ 21647587 (-) True XLOC_028762
TCONS_00055746 lncRNA downstream 4955 21637724 ~ 21643055 (-) False XLOC_028762
TCONS_00058202 lncRNA downstream 19012 21592244 ~ 21628998 (-) True XLOC_028761
TCONS_00055752 lncRNA upstream 3433 21656245 ~ 21657106 (-) True XLOC_028764
TCONS_00058204 lncRNA upstream 629913 22282725 ~ 22291753 (-) True XLOC_028768
TCONS_00055772 lncRNA upstream 1466607 23119419 ~ 23123510 (-) False XLOC_028777
TCONS_00058205 lncRNA upstream 1466607 23119419 ~ 23125640 (-) True XLOC_028777
TCONS_00058206 lncRNA upstream 1507203 23160015 ~ 23210047 (-) False XLOC_028778
TCONS_00055745 mRNA downstream 63852 21488990 ~ 21584158 (-) True XLOC_028760
TCONS_00055744 mRNA downstream 181185 21324004 ~ 21466825 (-) True XLOC_028759
TCONS_00055743 mRNA downstream 181530 21323006 ~ 21466480 (-) False XLOC_028759
TCONS_00055741 mRNA downstream 1126569 20507105 ~ 20521441 (-) False XLOC_028758
TCONS_00055742 mRNA downstream 1136415 20507229 ~ 20511595 (-) True XLOC_028758
TCONS_00055753 mRNA upstream 98950 21751762 ~ 21851473 (-) True XLOC_028765
TCONS_00055754 mRNA upstream 309504 21962316 ~ 22207873 (-) True XLOC_028766
TCONS_00055756 mRNA upstream 647518 22300330 ~ 22311610 (-) False XLOC_028769
TCONS_00055757 mRNA upstream 648310 22301122 ~ 22310956 (-) True XLOC_028769
TCONS_00055758 mRNA upstream 660044 22312856 ~ 22338906 (-) False XLOC_028770
TCONS_00055737 other downstream 1251840 20396049 ~ 20396170 (-) True XLOC_028756
TCONS_00055724 other downstream 1470142 20176143 ~ 20177868 (-) False XLOC_028749
TCONS_00055714 other downstream 1584776 20049324 ~ 20063234 (-) True XLOC_028742
TCONS_00055699 other downstream 2600455 19047466 ~ 19047555 (-) True XLOC_028730
TCONS_00055684 other downstream 2993749 18654155 ~ 18654261 (-) True XLOC_028720
TCONS_00055755 other upstream 583546 22236358 ~ 22237294 (-) True XLOC_028767
TCONS_00055773 other upstream 1573921 23226733 ~ 23226849 (-) True XLOC_028779
TCONS_00055774 other upstream 1766508 23419320 ~ 23419455 (-) True XLOC_028780
TCONS_00055776 other upstream 1799005 23451817 ~ 23451931 (-) True XLOC_028782
TCONS_00055780 other upstream 2093231 23746043 ~ 23754271 (-) True XLOC_028783

Expression Profile

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