RNA id: TU2441345



Basic Information


Item Value
RNA id TU2441345
length 2540
RNA type TUCP
GC content 0.43
exon number 3
gene id G2135034
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 38519571 ~ 38526920 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CATTGTTCAGAATCCAGTTTTAATATGAATCAACCATCAAAAGCACAGGGAAACATTACCTCATTACTGTTACAGGAAAACATTACCTCATTACTGTTACAGGGAAACATTACCTCATTACTGTTACAGGGAAACATTACCTCATTACTGTTACAGGAAAACATTACCTCATTACTGTTACAGGAAAACATTACCTCATTACTGTTACAGGAAAACATTACCTCATTACTGTTACAGGAAAACATTACCTCATTACTGTTACAGGAAAACATTACCTCATTACTGTTACAGGAAAACATTACCTCATTACTGTTACAGGAAAACATTACCTCATTACTGTTACAGGAAAACATTACCTCATTACTGTTACAGGAAAACATTACCTCATTACTGTTACAGGAAAACATTACCTCATTACTGTTACAGGAAAACATTACCTCATTACTGTTACAGGAAAACAGCTGAACTGTATAAAGAGCTAATTTACTTGGCATCATTGACAGACGGTTAGGAATTGGACATGAAGAACCTACACAAATACGGATTTTTATTTTCCTCATCCAAATATGTAAACTTAATTGTATATAACTATAAATATATAACTTAATTGTATATACATCAAGGTTTGTCATCCATCCTATAGAATCTCAACTTGATGTACGTAGAGCGATTGAGGCATACCATTCTGTGGGATCACATCTATCTGGCAGAGGAAGCTTTAGTTGAGAGGACAATACCTATTGGCTTTGTGGACATTTTTACATTACTCATTTTTATTTAGCAACTTCTTGATTTAGCGGGCACAaataagaaagaaaaaaacaagatTTAATAGTTGGAAAGAACAAGTCCTGTTTAGAGAGCTCACTTTGAGTTCATTGTTGTTCAATATGGTTTAGTAACCATTAgtaagcatatatatatatatatgtgtggtTACTAAGGGTTACTAAACCATATACATATAGGCCTATTATGTGTATAACCCTTCACTGTAGAGTAGATTAGAGTATAGTGTTGGAGGGGGAGAATAATGCTTTAAGTGCTTTATAATGGTCAATATTTACAAAAGGAGATTCTTCATAAATACAAAATAGAGAAGATTTGTATTCAACTGCTGACATTAACATTGTAATCCAAAAACAACGACAACATAGGACTACTTTCTTACTTACCAATTTGTTTCTCAACAGACatttaaaacaaacaaatatatttattgCAAATGTATTTTCTATATAGTATTACtaacatttatttattataacattattaaaacattttattaAGAGTCTTGGTACacatgcatgtttttttttttgaagaGTGGACTCAGAAAGAGAACAGTattgtacaaaataataataataattacagtttATAAAAATGCACTTTTTTTTGTAGCACCTTTGGTTTTCTGTGTTCCGCACAAAAGCACCTCTGTGGTTGTATCTGGAGCAACACTAGAGCTACCAGACAgggaggctgggctgggggagggaggaggggactgGAGCTACCAGACAGGGAGgctggggaagggaggaggggactGGAGCTACCAGACAGGGAGgctggggaagggaggaggggactGGAGCTACCAGACAGGGAGTCtggggaagggaggaagggggcTTGGCAGGTGAGCGGAACGTCTCTCTAGATAAGGTCATGGGGTAAGGGACGAGAAGGGGGAAagacgaggagaggaaaggggggcgTTGGGGTGAGTGGATCCTCCCTCTGTTTGCTGAAAGTGCACCACTGTCCGTGGACGGCATCAAGCCTCCTTTATTCCTCATGTCCCTCCTGTTACAAGGTAAAGTCACTGTGTGATTGGCCCTACAAGGGCGAGGAGTATTCCCCTGGGACAATGCTTCTACGACAGGGCAGAGGAGGGCGGCACGCTGTTCTcgagtggggggggtggggggtggggggcagcGTGCTGCTGGTCTGAAACTGGTGGTCTGATCACCTTATCAAGGATATAAAACACAGGTTTGGTTTAGAGCCTGAGGCCAGGTCGAGTGGAGTATAGGGAGGGTGAGTGATTGATGTCAGGAATTCAGTCGGCAGTACAAGGCATGCATGGAACAGAACACCCTCTAACCCTGTCCTTCAGCTGGTCGGGGAGTCGGGGGGTGGTGGTCAGGTCCTAGCCCATGAAGCAGACAGGGCCCACCTCGAAACCGAACCGCTGGCTGGGCTCACCAAAGTCATTGAACATGACATCGATGACGGGCACCTGGTCGATGCGAGGAGTGTTGATCTCCATCACTGTCTTGGAGTAGCCCGACTTTGAGCATCCATCTGAAAGTGCCTTGATGAAGGGGTTATTATCGTAGGACATCTCCTCGTCGTTGTAACCCAGGAAGCGTAGAGCCTTGTCGTAGCTGTCTGCCTTGGCATCGTACCAGGCTACCGACTGGTGGCAGATGTAGGTGAAATTCTGACGGGCCGTTGAGCTGAGCAGCTTCAGGAAGGTCATCTGGACCGTCTGGATGGTGTTCTCCTCCATGTCCACATAGTTCaac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2441334 lncRNA downstream 11488 38500884 ~ 38508083 (-) False G2135031
TU2441331 lncRNA downstream 11488 38502632 ~ 38508083 (-) True G2135031
TU2441311 lncRNA downstream 63733 38454745 ~ 38455838 (-) True G2135013
TU2441308 lncRNA downstream 66563 38450901 ~ 38453008 (-) True G2135011
TU2441297 lncRNA downstream 89065 38430030 ~ 38430506 (-) True G2135001
TU2441359 lncRNA upstream 15609 38542529 ~ 38543160 (-) True G2135045
TU2441374 lncRNA upstream 32698 38559618 ~ 38562656 (-) True G2135059
TU2441353 lncRNA upstream 45604 38572524 ~ 38572926 (-) True G2135040
TU2441446 lncRNA upstream 134170 38661090 ~ 38662162 (-) True G2135096
TU2441394 lncRNA upstream 154646 38681566 ~ 38683324 (-) False G2135071
XM_036966775.1 mRNA downstream 523349 37766370 ~ 37996222 (-) False LOC110509127
XM_036966776.1 mRNA downstream 524513 37766370 ~ 37995058 (-) False LOC110509127
XM_036966375.1 mRNA downstream 914691 37578708 ~ 37604880 (-) False LOC110509123
XM_021590092.2 mRNA downstream 958361 37546812 ~ 37561210 (-) True inhbab
XM_021590091.2 mRNA downstream 1046023 37471456 ~ 37473548 (-) True LOC110509120
XM_036966303.1 mRNA upstream 47797 38574717 ~ 38625443 (-) False LOC110509132
XM_036966302.1 mRNA upstream 47797 38574717 ~ 38625444 (-) False LOC110509132
XM_036966304.1 mRNA upstream 47797 38574717 ~ 38637568 (-) False LOC110509132
XM_036966300.1 mRNA upstream 47797 38574717 ~ 38644749 (-) False LOC110509132
XM_036966299.1 mRNA upstream 47797 38574717 ~ 38644750 (-) True LOC110509132
TU2440825 other downstream 389164 38128129 ~ 38130407 (-) True G2134625
TU2440638 other downstream 579728 37766718 ~ 37939843 (-) True LOC110509127
TU2439020 other downstream 1962118 36556500 ~ 36557453 (-) True LOC110509111
TU2438987 other downstream 2256241 36263002 ~ 36263330 (-) True G2133007
TU2438933 other downstream 2269796 36235515 ~ 36249775 (-) False G2132966
TU2442402 other upstream 478541 39005461 ~ 39006050 (-) True G2135837
TU2442821 other upstream 1276875 39803795 ~ 39829179 (-) True LOC110509145
TU2442908 other upstream 1416233 39943153 ~ 39945834 (-) True G2136189
TU2442946 other upstream 1463643 39990563 ~ 39997046 (-) True LOC110508256
TU2442992 other upstream 1524719 40051639 ~ 40121899 (-) True G2136243

Expression Profile