RNA id: TCONS_00055755


Basic Information

Item Value
RNA id TCONS_00055755
length 661
RNA type processed_transcript
GC content 0.35
exon number 2
gene id XLOC_028767
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 22236358 ~ 22237294 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgacaatatgtgtttaattaagctataaagatcagatgaaatgcatagtgaaatatgaaataaatgtctcttttgctgaaaatttaattaatctatatatttattattttaaaaatcaactcatttttgcccagagaaagaggcgcgcggcactagcggacatggcgtgcttttccaaaaaaagacgtacagtaacttgcagctgaactatgcacagtaatagggatacaatgaaaagccgattttcactattgaccctgtttttattcattgacggcttcccaacgccgcttttctgttgcgcgaaaaaaagctgctgcaaataagcaaatttatgacaaaacaattttaatagtttcatagtagtagctggtgtgcttcatctgcgtgattctgatttgacattcttccgctaaacttgcactgTGTTGATGTGTAAATGGACTATGTGTTGATGTGTTAATGGGCTATGATCTTTGCTATTgagttctctttgcaactttcaatttcgaggtgggggaagtgggaagaggcaattcaaatgtaccatctctaaaaaaaaaggccgcttacgcggcatttgtgtttattattaccttatttttattttattattattaatttattcattcattcttcattcattttcttttcggtttag

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000145180

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055752 lncRNA downstream 579252 21656245 ~ 21657106 (-) True XLOC_028764
TCONS_00058203 lncRNA downstream 588366 21634012 ~ 21647992 (-) False XLOC_028762
TCONS_00055748 lncRNA downstream 588771 21642885 ~ 21647587 (-) False XLOC_028762
TCONS_00055747 lncRNA downstream 588771 21642885 ~ 21647587 (-) True XLOC_028762
TCONS_00055746 lncRNA downstream 593303 21637724 ~ 21643055 (-) False XLOC_028762
TCONS_00058204 lncRNA upstream 45431 22282725 ~ 22291753 (-) True XLOC_028768
TCONS_00055772 lncRNA upstream 882125 23119419 ~ 23123510 (-) False XLOC_028777
TCONS_00058205 lncRNA upstream 882125 23119419 ~ 23125640 (-) True XLOC_028777
TCONS_00058206 lncRNA upstream 922721 23160015 ~ 23210047 (-) False XLOC_028778
TCONS_00057352 lncRNA upstream 967328 23204622 ~ 23210241 (-) True XLOC_028778
TCONS_00055754 mRNA downstream 28485 21962316 ~ 22207873 (-) True XLOC_028766
TCONS_00055753 mRNA downstream 384885 21751762 ~ 21851473 (-) True XLOC_028765
TCONS_00055749 mRNA downstream 583546 21648010 ~ 21652812 (-) False XLOC_028763
TCONS_00055750 mRNA downstream 583715 21649010 ~ 21652643 (-) False XLOC_028763
TCONS_00055745 mRNA downstream 652200 21488990 ~ 21584158 (-) True XLOC_028760
TCONS_00055756 mRNA upstream 63036 22300330 ~ 22311610 (-) False XLOC_028769
TCONS_00055757 mRNA upstream 63828 22301122 ~ 22310956 (-) True XLOC_028769
TCONS_00055758 mRNA upstream 75562 22312856 ~ 22338906 (-) False XLOC_028770
TCONS_00055759 mRNA upstream 76752 22314046 ~ 22335247 (-) True XLOC_028770
TCONS_00055760 mRNA upstream 116171 22353465 ~ 22363709 (-) True XLOC_028771
TCONS_00055751 other downstream 583726 21651671 ~ 21652632 (-) True XLOC_028763
TCONS_00055737 other downstream 1840188 20396049 ~ 20396170 (-) True XLOC_028756
TCONS_00055724 other downstream 2058490 20176143 ~ 20177868 (-) False XLOC_028749
TCONS_00055714 other downstream 2173124 20049324 ~ 20063234 (-) True XLOC_028742
TCONS_00055699 other downstream 3188803 19047466 ~ 19047555 (-) True XLOC_028730
TCONS_00055773 other upstream 989439 23226733 ~ 23226849 (-) True XLOC_028779
TCONS_00055774 other upstream 1182026 23419320 ~ 23419455 (-) True XLOC_028780
TCONS_00055776 other upstream 1214523 23451817 ~ 23451931 (-) True XLOC_028782
TCONS_00055780 other upstream 1508749 23746043 ~ 23754271 (-) True XLOC_028783
TCONS_00055802 other upstream 3236912 25474206 ~ 25478995 (-) False XLOC_028796

Expression Profile

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