RNA id: TCONS_00055757



Basic Information


Item Value
RNA id TCONS_00055757
length 1655
RNA type mRNA
GC content 0.47
exon number 16
gene id XLOC_028769
representative True

Chromosome Information


Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 22300330 ~ 22311610 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


ATGTGGAAATCTGTAGTGGGGCATGATGTTACTGTGGAGACTGAATCACAAGGGGACGACTGGGAAACAGATCCAAATTTTGAGAATGATGTCTCAGAACAAGAACAGAGATGGGGTGCCAAAACCATAGAAGGTTCAGGCCGAAAAGAACACATCAGcaTTGCAGATCTCAGGCAGAATGTGTCTCGGGAACATGAGGTGGTTAAGAAGAAGGAGTTGGACCAGGGTCCTAAAGCTTCTTACGGCTATGGAGGGAAATTTGGAGTTGAGAAAGACAGAATGGACAagGGTGCTTTAGGACACAGCTATGTGGCAGAGGTGGAACAGCACTCATCCCAGACAGATGCAGCAAAGGGTTTTGGTGGGAAATTTGGTGTACAGAAGGACAGAGTGGACAAGTCTGCCATGAGCTATGAATACAAGGCTCAGGTACAGCAGCATGCATCTCAGAAAGATTACGCTCAGGGTTTTGGGGGAAAGTATGGTGTGCAGAAAGAGCGAGTTGACAAGGCTGCGATGGGATACGACTACAAAGGCGAGACTGAGAAACACCAGTCGCAGAAAGACTACGCAAAAGGCTTTGGGGGGAAATATGGAGTGGAAAAAGAAAAGGTTGACAAGGCTGCAATGGGTTATGACTACAAGGGAGAAACGGAGAAACATCAGTCACAGAAAGACTACGCGAAAGGCTTCGGGGGGAAATATGGTGTGGAAAAAGAGAAGGTTGACAAGGCTGCTTTGGGTTATGATTACAAAGGTGAAACTGAGAAACATCAGTCACAGAAAGACTATGCAAAAGGCTTTGGGGGGAAATATGGTGTGGAAAAAGAAAAGGTTGACAAGGCTGCATTGGGTTACGACTACAAGGGAGAAACAGAGAAACATCAGTCACAGAAAGACTATGCAAAAGGTTTTGGAGGACGTTATGGAGTCCAGGAGGATCGTATGGATAAGAATGCATCTTCATTCAATAAGATGGAGTCACCATCATCATCTTATGAAAAGCCTCAAGCATTCGAGGGCTCAAGTGTAGGAGCTGGAAACCTTAAAGCTTGCTTTGAGAACATGGCGAAGGCCTCAGATGAGGACAACAAGAAGAAAGCAGAGGAGGAGAGAACCAGAAGACTCGCTAGAGAGAAAAGAGAACGAGAAGAGGCACGACGCAAACAGGAGGAGCAAAGCCAGCATGTGGAGGAAGAGAAACAGAGTCCTCCCCCTGTGCCAGTATCCCAGAAACCCCAACAAGAGTTCAGGAAACTGCCGGAAATTCCCAGAGAAGAGATTGAACCTGACGTTGAGgaggagaaTCAGCCTGAAAATGAGGAACCACCATCTCTGCCACCACGACCATCTGATTTGCTGGAAGACGAAACCTATGCTGAATGTGAACCTCCTCCTGTTCCTCAGGAGGAAGATTATGAGGATGTTGGCTCATACTCCGCCCAAGCTGGGGAAAATGATTATGAAGATTTAGGTGGGGGAGGAACAACAGCCAGGGCCATTTATGACTACCAAGGAGAGGACAGTGACGAGATCTCCTTTATGCCAGATGACATCATCACTAACATTGAGATGGTGGACGAGGGTTGGTGGAAAGGAATGTGTAATGGCCGCACAGGCCTGTTTCCTGCAAGCTTTGTGGAGCTTTTGTAGTT

Function


GO:

id name namespace
GO:0030833 regulation of actin filament polymerization biological_process
GO:0030041 actin filament polymerization biological_process
GO:0030427 site of polarized growth cellular_component
GO:0005884 actin filament cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030864 cortical actin cytoskeleton cellular_component
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7191 Predicted to enable actin filament binding activity. Predicted to be involved in regulation of actin filament polymerization. Predicted to act upstream of or within actin filament polymerization. Predicted to be active in cortical actin cytoskeleton; plasma membrane; and site of polarized growth. Predicted to colocalize with actin filament. Orthologous to human HCLS1 (hematopoietic cell-specific Lyn substrate 1).

Ensembl:

ensembl_id ENSDART00000162585

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00058204 lncRNA downstream 9369 22282725 ~ 22291753 (-) True XLOC_028768
TCONS_00055752 lncRNA downstream 644016 21656245 ~ 21657106 (-) True XLOC_028764
TCONS_00055748 lncRNA downstream 653535 21642885 ~ 21647587 (-) False XLOC_028762
TCONS_00055747 lncRNA downstream 653535 21642885 ~ 21647587 (-) True XLOC_028762
TCONS_00055746 lncRNA downstream 658067 21637724 ~ 21643055 (-) False XLOC_028762
TCONS_00055772 lncRNA upstream 808463 23119419 ~ 23123510 (-) False XLOC_028777
TCONS_00058205 lncRNA upstream 808463 23119419 ~ 23125640 (-) True XLOC_028777
TCONS_00058206 lncRNA upstream 849059 23160015 ~ 23210047 (-) False XLOC_028778
TCONS_00057352 lncRNA upstream 893666 23204622 ~ 23210241 (-) True XLOC_028778
TCONS_00057353 lncRNA upstream 1457522 23768478 ~ 23771489 (-) False XLOC_028784
TCONS_00055754 mRNA downstream 93249 21962316 ~ 22207873 (-) True XLOC_028766
TCONS_00055753 mRNA downstream 449649 21751762 ~ 21851473 (-) True XLOC_028765
TCONS_00055749 mRNA downstream 648310 21648010 ~ 21652812 (-) False XLOC_028763
TCONS_00055750 mRNA downstream 648479 21649010 ~ 21652643 (-) False XLOC_028763
TCONS_00055745 mRNA downstream 716964 21488990 ~ 21584158 (-) True XLOC_028760
TCONS_00055758 mRNA upstream 1900 22312856 ~ 22338906 (-) False XLOC_028770
TCONS_00055759 mRNA upstream 3090 22314046 ~ 22335247 (-) True XLOC_028770
TCONS_00055760 mRNA upstream 42509 22353465 ~ 22363709 (-) True XLOC_028771
TCONS_00055761 mRNA upstream 113495 22424451 ~ 22472653 (-) False XLOC_028772
TCONS_00055762 mRNA upstream 113497 22424453 ~ 22472653 (-) False XLOC_028772
TCONS_00055755 other downstream 63828 22236358 ~ 22237294 (-) True XLOC_028767
TCONS_00055751 other downstream 648490 21651671 ~ 21652632 (-) True XLOC_028763
TCONS_00055737 other downstream 1904952 20396049 ~ 20396170 (-) True XLOC_028756
TCONS_00055724 other downstream 2123254 20176143 ~ 20177868 (-) False XLOC_028749
TCONS_00055714 other downstream 2237888 20049324 ~ 20063234 (-) True XLOC_028742
TCONS_00055773 other upstream 915777 23226733 ~ 23226849 (-) True XLOC_028779
TCONS_00055774 other upstream 1108364 23419320 ~ 23419455 (-) True XLOC_028780
TCONS_00055776 other upstream 1140861 23451817 ~ 23451931 (-) True XLOC_028782
TCONS_00055780 other upstream 1435087 23746043 ~ 23754271 (-) True XLOC_028783
TCONS_00055802 other upstream 3163250 25474206 ~ 25478995 (-) False XLOC_028796

Expression Profile


Expression of TCONS_00055757 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.
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Expression of TCONS_00055757 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.