RNA id: TU2442588


Basic Information

Item Value
RNA id TU2442588
length 600
lncRNA type antisense_over
GC content 0.44
exon number 3
gene id G2135991
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 39327149 ~ 39327980 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgtccctctcctccatcatacTCCTCCTGCCATTTGTCCACCTGTCTGATGAGCTTGAGGAAGGAGCGTTTGGACATGGGAGTGTCTCGGTACATTGGCCAACCCAGGAACTGGAACTGTTGCACCATACGGTACCCGTCCTGaggctggacagacagacagatagatacaagttaataacaaacagacaggttaataacagacagacaggtggatacaggttaataacagacagacaggtagatagatagatataggttaataaacagacagacaggtgggtacaggttaataacagacagacaggtgggtacaggttaataacagacagacaggtgggcaCAGGTtaatgaacagacagacaggttaataacagacagacaggtgggtacaggttaataaacagacagacaggttaatAAACAGACAGACGGGTGTGTACAGGttaagaaacagacagacaggtggatacAGGttaataaacagacagacaggttaataacagacagacaggtggaaaTAGGttcataaacagacagacaggtagctgACAAGTCATTTTTAAGTGTGTTTGCATGTACAGCTGGAAGTATGTTAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2442547 lncRNA downstream 73967 39252578 ~ 39253182 (-) True G2135954
TU2442449 lncRNA downstream 225847 39100809 ~ 39101302 (-) True G2135878
TU2442398 lncRNA downstream 331836 38995080 ~ 38995313 (-) True G2135834
TU2442359 lncRNA downstream 336263 38944048 ~ 38990886 (-) True G2135808
TU2442589 lncRNA upstream 3051 39331031 ~ 39332471 (-) True G2135992
TU2442593 lncRNA upstream 5015 39332995 ~ 39346646 (-) True G2135995
TU2442607 lncRNA upstream 50231 39378211 ~ 39378968 (-) True G2136008
TU2442608 lncRNA upstream 51210 39379190 ~ 39379395 (-) True G2136009
TU2442609 lncRNA upstream 51883 39379863 ~ 39380100 (-) True G2136010
XM_036966895.1 mRNA downstream 624541 38685275 ~ 38702608 (-) True LOC118944870
XM_036966952.1 mRNA downstream 653928 38657804 ~ 38673221 (-) True LOC110509133
XM_036966299.1 mRNA downstream 682399 38574717 ~ 38644750 (-) True LOC110509132
XM_036966300.1 mRNA downstream 682400 38574717 ~ 38644749 (-) False LOC110509132
XM_036966304.1 mRNA downstream 689581 38574717 ~ 38637568 (-) False LOC110509132
XM_036965925.1 mRNA upstream 250237 39578217 ~ 39621092 (-) False LOC110509137
XR_005040159.1 mRNA upstream 251714 39579694 ~ 39582446 (-) False LOC118944811
XR_005040164.1 mRNA upstream 251714 39579694 ~ 39582451 (-) False LOC118944811
XR_005040166.1 mRNA upstream 251714 39579694 ~ 39582459 (-) False LOC118944811
XR_005040133.1 mRNA upstream 251714 39579694 ~ 39582467 (-) False LOC118944811
TU2442402 other downstream 321099 39005461 ~ 39006050 (-) True G2135837
TU2441345 other downstream 800229 38519571 ~ 38526920 (-) True G2135034
TU2440825 other downstream 1196742 38128129 ~ 38130407 (-) True G2134625
TU2440638 other downstream 1387306 37766718 ~ 37939843 (-) True LOC110509127
TU2439020 other downstream 2769696 36556500 ~ 36557453 (-) True LOC110509111
TU2442821 other upstream 475815 39803795 ~ 39829179 (-) True LOC110509145
TU2442908 other upstream 615173 39943153 ~ 39945834 (-) True G2136189
TU2442946 other upstream 662583 39990563 ~ 39997046 (-) True LOC110508256
TU2442992 other upstream 723659 40051639 ~ 40121899 (-) True G2136243
TU2444084 other upstream 1087323 40415303 ~ 40415540 (-) True G2137086

Expression Profile