RNA id: TU2442609



Basic Information


Item Value
RNA id TU2442609
length 238
lncRNA type antisense_over
GC content 0.48
exon number 1
gene id G2136010
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 39379863 ~ 39380100 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTCTGGACTGCTGCTCAGCGCTGACGGACTCCCCCTGGTGGCCGGACCCGTGTTGGAAAGCCAGGATCTGCCACCAAGCTCTAGAGTTCCACCGGGGTTGAAAGACCCTGAGTAAACAAACAGTGGGAAGAAAAAGGTATGTGAACCTtttagaattacctggatttctacataaattgggtcataaaatgtgatctgatcttcatctaagtcacaacaacagacaaacacagtctgc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2442608 lncRNA downstream 468 39379190 ~ 39379395 (-) True G2136009
TU2442607 lncRNA downstream 895 39378211 ~ 39378968 (-) True G2136008
TU2442593 lncRNA downstream 33217 39332995 ~ 39346646 (-) True G2135995
TU2442589 lncRNA downstream 47392 39331031 ~ 39332471 (-) True G2135992
TU2442588 lncRNA downstream 51883 39327149 ~ 39327980 (-) True G2135991
TU2442610 lncRNA upstream 284 39380384 ~ 39382268 (-) True G2136011
TU2442652 lncRNA upstream 44106 39424206 ~ 39426743 (-) True G2136040
TU2442657 lncRNA upstream 44864 39424964 ~ 39428092 (-) True G2136045
TU2442646 lncRNA upstream 54022 39434122 ~ 39497244 (-) True G2136034
TU2442656 lncRNA upstream 65433 39445533 ~ 39449370 (-) True G2136044
XM_036966895.1 mRNA downstream 677255 38685275 ~ 38702608 (-) True LOC118944870
XM_036966952.1 mRNA downstream 706642 38657804 ~ 38673221 (-) True LOC110509133
XM_036966299.1 mRNA downstream 735113 38574717 ~ 38644750 (-) True LOC110509132
XM_036966300.1 mRNA downstream 735114 38574717 ~ 38644749 (-) False LOC110509132
XM_036966304.1 mRNA downstream 742295 38574717 ~ 38637568 (-) False LOC110509132
XM_036965925.1 mRNA upstream 198117 39578217 ~ 39621092 (-) False LOC110509137
XR_005040159.1 mRNA upstream 199594 39579694 ~ 39582446 (-) False LOC118944811
XR_005040164.1 mRNA upstream 199594 39579694 ~ 39582451 (-) False LOC118944811
XR_005040166.1 mRNA upstream 199594 39579694 ~ 39582459 (-) False LOC118944811
XR_005040133.1 mRNA upstream 199594 39579694 ~ 39582467 (-) False LOC118944811
TU2442402 other downstream 373813 39005461 ~ 39006050 (-) True G2135837
TU2441345 other downstream 852943 38519571 ~ 38526920 (-) True G2135034
TU2440825 other downstream 1249456 38128129 ~ 38130407 (-) True G2134625
TU2440638 other downstream 1440020 37766718 ~ 37939843 (-) True LOC110509127
TU2439020 other downstream 2822410 36556500 ~ 36557453 (-) True LOC110509111
TU2442821 other upstream 423695 39803795 ~ 39829179 (-) True LOC110509145
TU2442908 other upstream 563053 39943153 ~ 39945834 (-) True G2136189
TU2442946 other upstream 610463 39990563 ~ 39997046 (-) True LOC110508256
TU2442992 other upstream 671539 40051639 ~ 40121899 (-) True G2136243
TU2444084 other upstream 1035203 40415303 ~ 40415540 (-) True G2137086

Expression Profile