RNA id: TU2442610


Basic Information

Item Value
RNA id TU2442610
length 1885
lncRNA type antisense_over
GC content 0.49
exon number 1
gene id G2136011
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 39380384 ~ 39382268 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACATTAGAGCCCACTTTATTTATTCATAATTAAACATACATCCAACAGTCGAAACCTAATTTTCACCTCAACTCGTCACAAAACCTGAACGATATTCTACCTGAGATTCCATTTCTGGCACATAGAAACACCTAGAAACTATTTCATTAAACTAAAGCTTTATTTTGTGTCACAGTTTCATTAAATCTACACTTGACGTGTCTCATAGGAACATTTCAGAACAATACAATTCTACTAtaggtattttattttttacaaataataTCTACATTTTTTTATCGAGACAAATTATTGCATTTCTTACATtgaaaaaaaacattggaatacTTAGATACCTAGATATTGATTTGTTGGTGTGGTTCACCTCATGTTGGTGATCTGAAAGCCAACGGTGTCCATGGCTTtcagacctaaaaaaaaaatggttttatatatatatattttatttatatatatatatatatatatatacatacattggggcggcagggtagcctagtggttagagcgttggactaataaccggaaggttgcaagttcaaacccccgagctgacaaggtacaaatctgtcgttctgcccctgaacaaggcagttagttacaccactgttcctagaccgtcattgaaaataagaatttgttcttaactgacttgcctagtaaaataaaggtaaataaaaaatatagcaGTGTCCATGTTCTATTGCCATCAACTGTGTACAGCTACAGTAAAAACCTCAATCCCAAACACATGGGAAAGAATAACATGACAAGACATGTCATATCTGTTGAAGAACTGGGAGCCACTCTGATCACACCCTCTCCTCTGATCTCCTGAGTTCCCTTAGGCCGCACCTTGATTCTAGATGGGGTTTGAGCATCCTCTGATCTCCTGAGTTCCCTTAAGCCACACCTTGATtctagatttatttatttatttacctgtaTTTTCCTATTCATATCCATCTAAATGATAACATGCCGAGGCAGAACTATTTAGGGTTCCTCTGTTGAAGAGCTGGGGATTACAGTATCCAGAGTTCAGATCAAGAAGAGCTAAAGGTGACTGTTACTCCCCCTCcttttccttcttcttcttctccctgaACGACTGCTACTTCCCTTTCCTCTTCCTGATTCGAGTCGGGCACACAGTCCTCACTGCCTGGGGTACGAGGCCTGCTCTGAGTCCTACTGCCTGGGGTGCGAGGCCTGCTCTGAGTCCCACTGCCTGGGGTGCGAGGCCTGCTCTGAGTCACACTGCCTGGGGTGCGAGGCCGGCTTGGAGTCCCACTGCCTGGGGCGCGAGGCCTGCTCTGAGTCCCACTGCCTGGGGTGCGAGGCCTGCTCTGAGTCCCGCTGCCTGGGGTGCGAGGCCTGCTCTGAGTCCCACTGCCTGGGGCGTGAGGCCTGCTCTGAGTCCCACTGCCTGGGGTGTGAGGCCTGCTCTGAGTCCCACTGCCTGGGGTGTGAGGCCTGCTCTGAGTCCCACTGCCTGGGGTGTGAGGCCTGCTCTGAGTCCCACTGCCTGGGGTGCGAGGCCTGCTCTGAGTCCCACTGCCTGGGGACCGAGGCCTGCTCTGAGTCCCACTGCCTGGGGTGTGAGGCCTGCTCTGAGTCCCACTGCCTGGGGCGCGAGGCCTGCTCTGAGTCCCACTGCCTGGGGTGCGAGGCCGGCTTGGAGTCCCACTGACTGGGGAGTGAGGCCTGCTCTGAGTCCCACTGCCTGGGGTGCGAGGCCGGCTTGGAGTCCCACTGACTGGGGAGTGAGGCCTGCTCTGAGTCCCACTGACTGGGGTGCGAGGCCGGCTTGGAGTCCCACTGACTGGGGAGTGAGGCCTGCTCTGAGTCCCACTGACTGGGGTAGGGCACCTGCTCCGAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2442609 lncRNA downstream 284 39379863 ~ 39380100 (-) True G2136010
TU2442608 lncRNA downstream 989 39379190 ~ 39379395 (-) True G2136009
TU2442607 lncRNA downstream 1416 39378211 ~ 39378968 (-) True G2136008
TU2442593 lncRNA downstream 33738 39332995 ~ 39346646 (-) True G2135995
TU2442589 lncRNA downstream 47913 39331031 ~ 39332471 (-) True G2135992
TU2442652 lncRNA upstream 41938 39424206 ~ 39426743 (-) True G2136040
TU2442657 lncRNA upstream 42696 39424964 ~ 39428092 (-) True G2136045
TU2442646 lncRNA upstream 51854 39434122 ~ 39497244 (-) True G2136034
TU2442656 lncRNA upstream 63265 39445533 ~ 39449370 (-) True G2136044
TU2442674 lncRNA upstream 76581 39458849 ~ 39459460 (-) False G2136059
XM_036966895.1 mRNA downstream 677776 38685275 ~ 38702608 (-) True LOC118944870
XM_036966952.1 mRNA downstream 707163 38657804 ~ 38673221 (-) True LOC110509133
XM_036966299.1 mRNA downstream 735634 38574717 ~ 38644750 (-) True LOC110509132
XM_036966300.1 mRNA downstream 735635 38574717 ~ 38644749 (-) False LOC110509132
XM_036966304.1 mRNA downstream 742816 38574717 ~ 38637568 (-) False LOC110509132
XM_036965925.1 mRNA upstream 195949 39578217 ~ 39621092 (-) False LOC110509137
XR_005040159.1 mRNA upstream 197426 39579694 ~ 39582446 (-) False LOC118944811
XR_005040164.1 mRNA upstream 197426 39579694 ~ 39582451 (-) False LOC118944811
XR_005040166.1 mRNA upstream 197426 39579694 ~ 39582459 (-) False LOC118944811
XR_005040133.1 mRNA upstream 197426 39579694 ~ 39582467 (-) False LOC118944811
TU2442402 other downstream 374334 39005461 ~ 39006050 (-) True G2135837
TU2441345 other downstream 853464 38519571 ~ 38526920 (-) True G2135034
TU2440825 other downstream 1249977 38128129 ~ 38130407 (-) True G2134625
TU2440638 other downstream 1440541 37766718 ~ 37939843 (-) True LOC110509127
TU2439020 other downstream 2822931 36556500 ~ 36557453 (-) True LOC110509111
TU2442821 other upstream 421527 39803795 ~ 39829179 (-) True LOC110509145
TU2442908 other upstream 560885 39943153 ~ 39945834 (-) True G2136189
TU2442946 other upstream 608295 39990563 ~ 39997046 (-) True LOC110508256
TU2442992 other upstream 669371 40051639 ~ 40121899 (-) True G2136243
TU2444084 other upstream 1033035 40415303 ~ 40415540 (-) True G2137086

Expression Profile