RNA id: TCONS_00055762



Basic Information


Item Value
RNA id TCONS_00055762
length 2593
RNA type mRNA
GC content 0.50
exon number 9
gene id XLOC_028772
representative False

Chromosome Information


Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 22424451 ~ 22472653 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


CAGGATTGAAGGGATCCAGTTTCTAACTGTCGGCATAGATATGGACAAAATTTTCGGGTTTTAACAAACGCAGACTTTACGTTTGGATTAGAGCTCCACGAGGCGAAATACGACTGCTAAACAGCGCGATTTGTTAAGCTTTGTTACACATCCGCAGTGGAGAGCGAAGTATTGTTTTGGTTGTGTGGTAGATCAGGCGGCGGGGTCTCACCCGAGTCCCCCGTGTCTTTATTCACAGTTATTACAGTGGACATAAACGGCCTTGTGGATGCACTTAGATGTGTGCAATGAGTGCTGTGGCTGACATGCCTCAGTGTTTTGGATTGCTGTGCTCTGGACTCAGTAGGACAAGAGACTCCCAGCACAGAACGTCATGAGCATAGTCATCCCAGTAGGGGTGGACACGGCCAACACCTCGTATCTGGACATGGCTGCAGGCTCAGAACCAGAATCTGTGGAGGCGAGCTCTGTGGTAGTTGAGAAGTCCACCTACCCTCACCAGATTTACAGCAGCAGCTCCCACCACTCCCACGGATACATCGGTCTGCCTTACGCCGACCATAATTATGGGGCGCGACCCCCACCCACCCCGCCGGCGTCCCCACCTCCCTCGGTGCTGATCCGGCCGGGCGAGAGCTTGTTTGTGTCCGGAAGCCGGCCTGGTGAGAACTTGTTTGTGCCGGGCGGGCAGGACGAGGCGTCGCGTGGCACCACGCTCAGCACCTCGGAGGACGGCAGCTACGGTGCTGACATCACACGCTGCATCTGTGGCTTCACCCACGACGATGGCTACATGATCTGCTGCGACAAGTGCAGtgtgtggCAGCACATAGACTGCATGGGGATCGACAGGCAGCACATTCCCGAAACCTACCTGTGTGAGCGCTGTCAGCCACGCACCCTGGACAGAGAGCACGCCATCCTCCTGCAAACCAGGAAGAGAGAGAACATGtctgatggGGACACCAGTGCTACAGAAAGCGGAGATGAGGTTCCACTAGAGCTGTACACAGCGTTTCAGCACACCCCTACCAGCATCACACTCACAACAGCACGTCTGGGTAACAAACAGGCTGATAAGAAACGAAAGAAGAGCGGAGAGAAGGAGCCGCCGGCTACAGCCAGGGCCAAGAAGtCATTCCGTGAAGGCTCTAGAAAATCATCTAGAGTAAAGGGCTCCGCTCCCGAGTGTGAGCCGATTGATCCTCCCTCTCTATGGGAGAATAAGATGAAGTCGTGGATGGAGCGCTACGAGGAGGCCAGCAGTAACCGCATCTACTTATCAACAAACTGTATTAccccctcctcctccacctcccccccaacaaactcctcccacacagACCCCGCCCAATCCGAGCATCCCTCAGATCGCAGGTGGCAATCGAGGACCCGCTCCTTCCTCCGCCTCTTTCCACACCACCGGATACTTGGGCACAGGATGGCACTGACCACACCCACCAAAACCCCGCCCTCCAGACGGACTCTCTCAGAGAGGGGGCGGAGCTACATCTTGTAACATACAGCACCACTGTAAATATTTTCTATGTACCTTTTCACAAAGGCTAATGTAACCTGGTGGGGGTACATTTTAAGAAGAAAATGAGGACTGTAACAGAGTAGACTGTGTGTAAAAGATGATGGTTAATGAACCCTGGTGCTCATCACAGTCCCCCACACCTCCCGTCACAACCTCGTACTGCCATCCTGTCTTTTCCAGACGTCTTTTTttactttgaatgtttttattcattttaatcgCACCTTTCCGCCGTCTTTTCCTGTTTTGTCCTCCCAGCGCAATGGGACATTCCAGTTTCTTCCCTACCGTTTCCTAATCTCCCCCTGTTTTTTCACTCATCAGTTATTTGTTTTATCTAGGCGCTCATTATATAGCAAAAAGGTTTTGTATAGAGAAAAAATAcagaatcattattttttttattccttcaTGTAAGAGAAATATCTGTGCACCGCTGCAGAGAAATCCAGAGGAGACCTTTCCGATAGGCCGCTTCACTGCCCCAGGAGACTGCACTTGTGTGAATGAGCGAGTCTGTGTGCATGAGTGTCTGTTTTTACGCGGAAGGGAGCGTGAATGCTTGTGTGCCACCCGCATCCGTGCGCATATTTATAGTGCGAGCGAGAGGCGGATGGCAAATAAGGCGCAGACAGATATGCGTGCTGTTCTCTGTGGCAGCTTCAGAAAGAGAGGTCCTTCCTGTAGGGGGTAAGCGGTTTATTTTTGAATATCAATGGTTATTTGTAGAAAGTGTAATTTAATGTATAGGTGGTTACTCCAGCTTTCTCCAGAAACAGTTGTAAATATTggcttcttttcttttctatGCTTGTATAATTGGCTCCCATCCCCATTTTGGAATATGGTTGTAAATACAAGCGCTCTTGACGAAAAACGCTGAATGTTTCTGTGACTGTAGCACTATTTTTATTTCCTCCTCtctggtttattttttttactgtttgtgtgtgagtgtatgtgtgtgtgaaggacAGAGGCTCACAGACACAGCACTGGTTGGCTATTTTCATGGTTCATTATAATAAATCACTGTAATGACAGTTTTATACC

Function


GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4120 Predicted to enable metal ion binding activity. Is expressed in central nervous system and intermediate cell mass of mesoderm. Human ortholog(s) of this gene implicated in autistic disorder and cervical cancer. Orthologous to human KMT2E (lysine methyltransferase 2E (inactive)).

Ensembl:

ensembl_id ENSDART00000130072

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00058204 lncRNA downstream 132700 22282725 ~ 22291753 (-) True XLOC_028768
TCONS_00055752 lncRNA downstream 767347 21656245 ~ 21657106 (-) True XLOC_028764
TCONS_00055748 lncRNA downstream 776866 21642885 ~ 21647587 (-) False XLOC_028762
TCONS_00055747 lncRNA downstream 776866 21642885 ~ 21647587 (-) True XLOC_028762
TCONS_00055746 lncRNA downstream 781398 21637724 ~ 21643055 (-) False XLOC_028762
TCONS_00055772 lncRNA upstream 646766 23119419 ~ 23123510 (-) False XLOC_028777
TCONS_00058205 lncRNA upstream 646766 23119419 ~ 23125640 (-) True XLOC_028777
TCONS_00058206 lncRNA upstream 687362 23160015 ~ 23210047 (-) False XLOC_028778
TCONS_00057352 lncRNA upstream 731969 23204622 ~ 23210241 (-) True XLOC_028778
TCONS_00057353 lncRNA upstream 1295825 23768478 ~ 23771489 (-) False XLOC_028784
TCONS_00055760 mRNA downstream 60744 22353465 ~ 22363709 (-) True XLOC_028771
TCONS_00055758 mRNA downstream 85547 22312856 ~ 22338906 (-) False XLOC_028770
TCONS_00055759 mRNA downstream 89206 22314046 ~ 22335247 (-) True XLOC_028770
TCONS_00055756 mRNA downstream 112843 22300330 ~ 22311610 (-) False XLOC_028769
TCONS_00055764 mRNA upstream 12177 22484830 ~ 22519525 (-) False XLOC_028773
TCONS_00055765 mRNA upstream 12328 22484981 ~ 22519516 (-) False XLOC_028773
TCONS_00055766 mRNA upstream 19702 22492355 ~ 22519525 (-) False XLOC_028773
TCONS_00055767 mRNA upstream 32964 22505617 ~ 22519525 (-) True XLOC_028773
TCONS_00055768 mRNA upstream 185819 22658472 ~ 22671469 (-) True XLOC_028774
TCONS_00055755 other downstream 187159 22236358 ~ 22237294 (-) True XLOC_028767
TCONS_00055751 other downstream 771821 21651671 ~ 21652632 (-) True XLOC_028763
TCONS_00055737 other downstream 2028283 20396049 ~ 20396170 (-) True XLOC_028756
TCONS_00055724 other downstream 2246585 20176143 ~ 20177868 (-) False XLOC_028749
TCONS_00055714 other downstream 2361219 20049324 ~ 20063234 (-) True XLOC_028742
TCONS_00055773 other upstream 754080 23226733 ~ 23226849 (-) True XLOC_028779
TCONS_00055774 other upstream 946667 23419320 ~ 23419455 (-) True XLOC_028780
TCONS_00055776 other upstream 979164 23451817 ~ 23451931 (-) True XLOC_028782
TCONS_00055780 other upstream 1273390 23746043 ~ 23754271 (-) True XLOC_028783
TCONS_00055802 other upstream 3001553 25474206 ~ 25478995 (-) False XLOC_028796

Expression Profile


Expression of TCONS_00055762 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 50.
End of interactive chart.
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Expression of TCONS_00055762 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 50.
End of interactive chart.