RNA id: TCONS_00055764


Basic Information

Item Value
RNA id TCONS_00055764
length 3094
RNA type mRNA
GC content 0.49
exon number 18
gene id XLOC_028773
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 22484830 ~ 22519525 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTAGGAAGATGGCGGCTGCCCCGCTATACTGTGTCTGCCGGCAGCCTTATGATGTTAACCGGTTTATGATCGAATGCGACATCTGTAAAGACTGGTTTCACGGCAGTTGTGTTCAGGTAGTGGAGCACCATGCTGCTGATATCGATGTTTATCACTGTCCAAACTGTGAGCCCATCCATGGACCCTACATGATGAAAAAGCATAACAACTGGCACAGGCATGACTACACGGAGCCAAATGATGGCACACGGCCCGTGCAGGCAGGAACTGCTGTGTTTGTGAAGGAACTCCAGGCCAGGAGCTTTGCCAGCGGTGATATTCTGGTGCAGATGCAGGGGAATCAGGTGACCAAACGCTTCTTGGAGAAAGAGGGCTTCAATTACCCTATAGTGGTGCATGACCTGGATGGACTGGGGCTGAAACTGCCCCCTCCATCATTCTCTGTCAGTGATGTGGAGCATTACGTTGGTGCAAATAAAGTCATCGACGTGATTGATGTGGCGAAACAGGCAGACAGTAAGATGAAGCTGGGAGAGTTTGTCAAATATTACTACCAACCTGAACGGCCCAAAGTGTTGAATGTTATCAGCCTGGAGTTCTCTGATACAAGgaTGTCAAATCTGGTGGTGGTTCCTGATATCGCTCAAAAGATGTCCTGGGTTGAAAACTACTGGCCCGATGACTCGTTCTTCCCCAAACCGTTCGTGCAGAAGTATTGTCTTATGGGAATGAAAAACAGCTACACAGATTTCCACATCGACTTTGGAGGAACTTCAGTGTGGTATCATGTACTTTGGggagagaagattttctactTGATCAAGCCAACGAAAGCTAACCTTGCACTATATGAGGCCTGGAGCTCATCGCCTAATCAAAGCGAAGTTTTCTTTGGGGAAAAAGTCGACAAGTGTTACAAATGCGTGGTGAAGCAGGGAACTACCATCTTACTGCCTACTGGCTGGATTCATGCTGTTCTCACTTCTCAGGACTCGATGGCGTTTGGAGGAAACTTCTTGCATAACTTAAACATAGACATGCAGCTCAGGTGTTATGAGATGGAGCGCAGACTGAAGACTCCAGATCTCTTTAAGTTCCCATATTTTGAGGCCATCTGCTGGTATGTGGCCAAAAACCTGCTGGAGACTCTTAAAGaacTGCGTGAGAATAAATGTGAAGCTCAGGGTTTTCTGGTGAACGGAGTGAAAGCTTTAATCTCATCACTGAAGATGTGGTTGAGGAGGGAGCTCACTCAGCCTAACAGCGAAGTGCCAGACAACATCAGACCAGGACACCTCATTAAAGCTCTGAGCAAAGAGATCCGACACCTCGAGGACGATTCCAATAAAGCTGTGAAAACTCAGGGAAGTGCTGAATGTTCTTTATCCCGCTCGACACTGGAGAAAGGAGATCAAGCCCAACAGGCTGCTCGGCGACTGCaagatcatcatcatcacagaCGCCgccaccaccatcaccaccatcatcatcatcatcaccaccaccatcatcacAGCCGAAAACTGCCCTCAAACCTGGACGTGCTGGAGCTCCACACACTGGAGGTGTTGAAGAGACTGGAGGTTGGCCAGCTGAAGGAGGACTCGGCCTTCAGCTCCAAAGTCAATGGCAAGTTCAAGAAAGTGTGTCCAGTGCCTGCTGCGGCGGTGGAGGCTAGTCATGATAACGCCCTGCGGCTGGTCATGTGCAATGGAAAGATTATTCGGGAGAGGATGCCCATCACTAATGTGGCAGCAACAGTCAACGCCGTGGAGATGTACCATAAACACAGGATAAAGCTGGAAAGAATCCCAATGTGTCCAGAagaaaaagttaaaaaagaaaaatgtgagGATGAATTTGGTGTACAATGCACTATAAAGAAACCAGTCAGTCAAGGTGAAAGTGTGCAGACAGAACTCAGGACAGAGTCGCCACATTTAGCATCTTCAGACAGCGACTCAAAGGCGGGTGATTCTGCTGAGAAGTGTTCATTGGAGTCTGAGAGTTCAGATGGAGAGGACGGAGGAAGCCAGAGAGACTCAGGGACTTTTGTGGAGCATCTAAACAGCCACCGGCATAGCCACCATAAGCAAGCATTAAAACGTGAACGTCCTACCTCACCCAACACTGACTGTGCCATTCAGGGCATGCTGTCGATGGCAGGTCTGCTGTGTCCGCAGGCGTCAGGAGGAGCGGCTGATATTTTACAGCAGCGCTGGTGGGCCAGTCAGGGTAACGGCAGCAGCACCAGCAGCAGCAGTGACATGTGGGACAGCAGTGAACCCTGTTCAGCCCCCCGCAGCCCAGATGCAGAGGACGGCAGTCTGGGAGAGGAGTATTCATACAGAGAGAGCTCGCTTTCTCCTCCACTGCACCCCTCCAAACGACACGCGCCAAACCCCACACCCGTCAGCAACCAGGCCACTAAAGGAAAGCGTCCTAAGAAAGGACAGGCGACGGCTAAACAGAGGCTTGGAAAGATCTTGAAAATGAGCCGTCATAAAGGCTTATTCCTGTAGCATGATGGAGAAAAAACAAGACACGGCTGCTTTTCTTGATGCGCTGGGATTATTTCACACTCACTCACTGTGCATGTTTAGGCAACAGGGTATGATCACTTTCTTCACCAATCAATCACCAAAAAAACACATCAATTAGTGCAAGAAAACAGCTTTACTTTAGCCAACATCACAACATGAACAGCCAAGAGTCTCCAAAGGAAGCACAGAAGTGGACGggaaagagtgtgtatgtgcgtgcttgtgtgtccCGAATTGAGGCCTCTTCTGTCCCTCATCTTTACCTCGATTGACGTGTGTAGCATGAAGCCGATGGTCTTCCTCATCCCTCAACAGGGCGGCACTCCATTGGACCCTCAGTTCCTCCTCCAGTCGTCTTCAATCTGTGTTTTTCCTCCTCCTCTGATCGTCTCAGGCTGATGTGTGAGCTTTTTATAAATGGTGCTGAACATTTATATGTCCTTCTCTCAAACCCTTGTGTTCCTCTTTAAGCAATAATTGTACAGCGGTGAGTGGTGTTGAGGATTTTACTGGGCCGCACTTTTAGGATGCAGGAAAAAATAAGTCCTCT

Function

GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0071557 histone H3-K27 demethylation biological_process
GO:0033169 histone H3-K9 demethylation biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0007399 nervous system development biological_process
GO:0030901 midbrain development biological_process
GO:0005634 nucleus cellular_component
GO:0071558 histone demethylase activity (H3-K27 specific) molecular_function
GO:0046872 metal ion binding molecular_function
GO:0035575 histone demethylase activity (H4-K20 specific) molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0051213 dioxygenase activity molecular_function
GO:0032454 histone demethylase activity (H3-K9 specific) molecular_function
GO:0051864 histone demethylase activity (H3-K36 specific) molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9829 Enables histone demethylase activity (H3-K27 specific) and histone demethylase activity (H3-K9 specific). Involved in midbrain development. Acts upstream of or within histone H3-K27 demethylation and histone H3-K9 demethylation. Predicted to be located in nucleus. Is expressed in several structures, including anterior axial hypoblast; immature eye; margin; mesoderm; and nervous system. Human ortholog(s) of this gene implicated in melanoma. Orthologous to human KDM7A (lysine demethylase 7A).

Ensembl:

ensembl_id ENSDART00000186258

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058204 lncRNA downstream 193077 22282725 ~ 22291753 (-) True XLOC_028768
TCONS_00055752 lncRNA downstream 827724 21656245 ~ 21657106 (-) True XLOC_028764
TCONS_00055748 lncRNA downstream 837243 21642885 ~ 21647587 (-) False XLOC_028762
TCONS_00055747 lncRNA downstream 837243 21642885 ~ 21647587 (-) True XLOC_028762
TCONS_00055746 lncRNA downstream 841775 21637724 ~ 21643055 (-) False XLOC_028762
TCONS_00055772 lncRNA upstream 599894 23119419 ~ 23123510 (-) False XLOC_028777
TCONS_00058205 lncRNA upstream 599894 23119419 ~ 23125640 (-) True XLOC_028777
TCONS_00058206 lncRNA upstream 640490 23160015 ~ 23210047 (-) False XLOC_028778
TCONS_00057352 lncRNA upstream 685097 23204622 ~ 23210241 (-) True XLOC_028778
TCONS_00057353 lncRNA upstream 1248953 23768478 ~ 23771489 (-) False XLOC_028784
TCONS_00055761 mRNA downstream 12177 22424451 ~ 22472653 (-) False XLOC_028772
TCONS_00055762 mRNA downstream 12177 22424453 ~ 22472653 (-) False XLOC_028772
TCONS_00055763 mRNA downstream 12177 22426734 ~ 22472653 (-) True XLOC_028772
TCONS_00055760 mRNA downstream 121121 22353465 ~ 22363709 (-) True XLOC_028771
TCONS_00055758 mRNA downstream 145924 22312856 ~ 22338906 (-) False XLOC_028770
TCONS_00055768 mRNA upstream 138947 22658472 ~ 22671469 (-) True XLOC_028774
TCONS_00055769 mRNA upstream 211270 22730795 ~ 22749553 (-) True XLOC_028775
TCONS_00055770 mRNA upstream 235940 22755465 ~ 23083187 (-) False XLOC_028776
TCONS_00055771 mRNA upstream 239393 22758918 ~ 23082985 (-) True XLOC_028776
TCONS_00055775 mRNA upstream 920879 23440404 ~ 23643272 (-) False XLOC_028781
TCONS_00055755 other downstream 247536 22236358 ~ 22237294 (-) True XLOC_028767
TCONS_00055751 other downstream 832198 21651671 ~ 21652632 (-) True XLOC_028763
TCONS_00055737 other downstream 2088660 20396049 ~ 20396170 (-) True XLOC_028756
TCONS_00055724 other downstream 2306962 20176143 ~ 20177868 (-) False XLOC_028749
TCONS_00055714 other downstream 2421596 20049324 ~ 20063234 (-) True XLOC_028742
TCONS_00055773 other upstream 707208 23226733 ~ 23226849 (-) True XLOC_028779
TCONS_00055774 other upstream 899795 23419320 ~ 23419455 (-) True XLOC_028780
TCONS_00055776 other upstream 932292 23451817 ~ 23451931 (-) True XLOC_028782
TCONS_00055780 other upstream 1226518 23746043 ~ 23754271 (-) True XLOC_028783
TCONS_00055802 other upstream 2954681 25474206 ~ 25478995 (-) False XLOC_028796

Expression Profile

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