Item | Value |
---|---|
RNA id | TCONS_00055765 |
length | 2628 |
RNA type | mRNA |
GC content | 0.50 |
exon number | 19 |
gene id | XLOC_028773 |
representative | False |
Item | Value |
---|---|
chromosome id | NC_007115.7 |
NCBI id | CM002888.2 |
chromosome length | 78093715 |
location | 22484830 ~ 22519525 (-) |
genome version | GRCz11_2017_zebrafish_Genome |
species | zebrafish (Danio rerio) |
id | name | namespace |
---|---|---|
GO:0006325 | chromatin organization | biological_process |
GO:0071557 | histone H3-K27 demethylation | biological_process |
GO:0033169 | histone H3-K9 demethylation | biological_process |
GO:0055114 | oxidation-reduction process | biological_process |
GO:0007399 | nervous system development | biological_process |
GO:0030901 | midbrain development | biological_process |
GO:0005634 | nucleus | cellular_component |
GO:0071558 | histone demethylase activity (H3-K27 specific) | molecular_function |
GO:0046872 | metal ion binding | molecular_function |
GO:0035575 | histone demethylase activity (H4-K20 specific) | molecular_function |
GO:0016491 | oxidoreductase activity | molecular_function |
GO:0051213 | dioxygenase activity | molecular_function |
GO:0032454 | histone demethylase activity (H3-K9 specific) | molecular_function |
GO:0051864 | histone demethylase activity (H3-K36 specific) | molecular_function |
id | description |
---|---|
ZDB-GENE-030131-9829 | Enables histone demethylase activity (H3-K27 specific) and histone demethylase activity (H3-K9 specific). Involved in midbrain development. Acts upstream of or within histone H3-K27 demethylation and histone H3-K9 demethylation. Predicted to be located in nucleus. Is expressed in several structures, including anterior axial hypoblast; immature eye; margin; mesoderm; and nervous system. Human ortholog(s) of this gene implicated in melanoma. Orthologous to human KDM7A (lysine demethylase 7A). |
ensembl_id | ENSDART00000130409 |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TCONS_00058204 | lncRNA | downstream | 193228 | 22282725 ~ 22291753 (-) | True | XLOC_028768 |
TCONS_00055752 | lncRNA | downstream | 827875 | 21656245 ~ 21657106 (-) | True | XLOC_028764 |
TCONS_00055748 | lncRNA | downstream | 837394 | 21642885 ~ 21647587 (-) | False | XLOC_028762 |
TCONS_00055747 | lncRNA | downstream | 837394 | 21642885 ~ 21647587 (-) | True | XLOC_028762 |
TCONS_00055746 | lncRNA | downstream | 841926 | 21637724 ~ 21643055 (-) | False | XLOC_028762 |
TCONS_00055772 | lncRNA | upstream | 599903 | 23119419 ~ 23123510 (-) | False | XLOC_028777 |
TCONS_00058205 | lncRNA | upstream | 599903 | 23119419 ~ 23125640 (-) | True | XLOC_028777 |
TCONS_00058206 | lncRNA | upstream | 640499 | 23160015 ~ 23210047 (-) | False | XLOC_028778 |
TCONS_00057352 | lncRNA | upstream | 685106 | 23204622 ~ 23210241 (-) | True | XLOC_028778 |
TCONS_00057353 | lncRNA | upstream | 1248962 | 23768478 ~ 23771489 (-) | False | XLOC_028784 |
TCONS_00055761 | mRNA | downstream | 12328 | 22424451 ~ 22472653 (-) | False | XLOC_028772 |
TCONS_00055762 | mRNA | downstream | 12328 | 22424453 ~ 22472653 (-) | False | XLOC_028772 |
TCONS_00055763 | mRNA | downstream | 12328 | 22426734 ~ 22472653 (-) | True | XLOC_028772 |
TCONS_00055760 | mRNA | downstream | 121272 | 22353465 ~ 22363709 (-) | True | XLOC_028771 |
TCONS_00055759 | mRNA | downstream | 149734 | 22314046 ~ 22335247 (-) | True | XLOC_028770 |
TCONS_00055768 | mRNA | upstream | 138956 | 22658472 ~ 22671469 (-) | True | XLOC_028774 |
TCONS_00055769 | mRNA | upstream | 211279 | 22730795 ~ 22749553 (-) | True | XLOC_028775 |
TCONS_00055770 | mRNA | upstream | 235949 | 22755465 ~ 23083187 (-) | False | XLOC_028776 |
TCONS_00055771 | mRNA | upstream | 239402 | 22758918 ~ 23082985 (-) | True | XLOC_028776 |
TCONS_00055775 | mRNA | upstream | 920888 | 23440404 ~ 23643272 (-) | False | XLOC_028781 |
TCONS_00055755 | other | downstream | 247687 | 22236358 ~ 22237294 (-) | True | XLOC_028767 |
TCONS_00055751 | other | downstream | 832349 | 21651671 ~ 21652632 (-) | True | XLOC_028763 |
TCONS_00055737 | other | downstream | 2088811 | 20396049 ~ 20396170 (-) | True | XLOC_028756 |
TCONS_00055724 | other | downstream | 2307113 | 20176143 ~ 20177868 (-) | False | XLOC_028749 |
TCONS_00055714 | other | downstream | 2421747 | 20049324 ~ 20063234 (-) | True | XLOC_028742 |
TCONS_00055773 | other | upstream | 707217 | 23226733 ~ 23226849 (-) | True | XLOC_028779 |
TCONS_00055774 | other | upstream | 899804 | 23419320 ~ 23419455 (-) | True | XLOC_028780 |
TCONS_00055776 | other | upstream | 932301 | 23451817 ~ 23451931 (-) | True | XLOC_028782 |
TCONS_00055780 | other | upstream | 1226527 | 23746043 ~ 23754271 (-) | True | XLOC_028783 |
TCONS_00055802 | other | upstream | 2954690 | 25474206 ~ 25478995 (-) | False | XLOC_028796 |