RNA id: TCONS_00055765



Basic Information


Item Value
RNA id TCONS_00055765
length 2628
RNA type mRNA
GC content 0.50
exon number 19
gene id XLOC_028773
representative False

Chromosome Information


Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 22484830 ~ 22519525 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


ATGGCGGCTGCCCCGCTATACTGTGTCTGCCGGCAGCCTTATGATGTTAACCGGTTTATGATCGAATGCGACATCTGTAAAGACTGGTTTCACGGCAGTTGTGTTCAGGTAGTGGAGCACCATGCTGCTGATATCGATGTTTATCACTGTCCAAACTGTGAGCCCATCCATGGACCCTACATGATGAAAAAGCATAACAACTGGCACAGGCATGACTACACGGAGCCAAATGATGGCACACGGCCCGTGCAGGCAGGAACTGCTGTGTTTGTGAAGGAACTCCAGGCCAGGAGCTTTGCCAGCGGTGATATTCTGGTGCAGATGCAGGGGAATCAGGTGACCAAACGCTTCTTGGAGAAAGAGGGCTTCAATTACCCTATAGTGGTGCATGACCTGGATGGACTGGGGCTGAAACTGCCCCCTCCATCATTCTCTGTCAGTGATGTGGAGCATTACGTTGGTGCAAATAAAGTCATCGACGTGATTGATGTGGCGAAACAGGCAGACAGTAAGATGAAGCTGGGAGAGTTTGTCAAATATTACTACCAACCTGAACGGCCCAAAGTGTTGAATGTTATCAGCCTGGAGTTCTCTGATACAAGgaTGTCAAATCTGGTGGTGGTTCCTGATATCGCTCAAAAGATGTCCTGGGTTGAAAACTACTGGCCCGATGACTCGTTCTTCCCCAAACCGTTCGTGCAGAAGTATTGTCTTATGGGAATGAAAAACAGCTACACAGATTTCCACATCGACTTTGGAGGAACTTCAGTGTGGTATCATGTACTTTGGggagagaagattttctactTGATCAAGCCAACGAAAGCTAACCTTGCACTATATGAGGCCTGGAGCTCATCGCCTAATCAAAGCGAAGTTTTCTTTGGGGAAAAAGTCGACAAGTGTTACAAATGCGTGGTGAAGCAGGGAACTACCATCTTACTGCCTACTGGCTGGATTCATGCTGTTCTCACTTCTCAGGACTCGATGGCGTTTGGAGGAAACTTCTTGCATAACTTAAACATAGACATGCAGCTCAGGTGTTATGAGATGGAGCGCAGACTGAAGACTCCAGATCTCTTTAAGTTCCCATATTTTGAGGCCATCTGCTGGTATGTGGCCAAAAACCTGCTGGAGACTCTTAAAGaacTGCGTGAGAATAAATGTGAAGCTCAGGGTTTTCTGGTGAACGGAGTGAAAGCTTTAATCTCATCACTGAAGATGTGGTTGAGGAGGGAGCTCACTCAGCCTAACAGCGAAGTGCCAGACAACATCAGACCAGGACACCTCATTAAAGCTCTGAGCAAAGAGATCCGACACCTCGAGGACGATTCCAATAAAGCTGTGAAAACTCAGGGAAGTGCTGAATGTTCTTTATCCCGCTCGACACTGGAGAAAGGAGATCAAGCCCAACAGGCTGCTCGGCGACTGCaagatcatcatcatcacagaCGCCgccaccaccatcaccaccatcatcatcatcatcaccaccaccatcatcacAGCCGAAAACTGCCCTCAAACCTGGACGTGCTGGAGCTCCACACACTGGAGGTGTTGAAGAGACTGGAGGTTGGCCAGCTGAAGGAGGACTCGGCCTTCAGCTCCAAAGTCAATGGCAAGTTCAAGAAAGTGTGTCCAGTGCCTGCTGCGGCGGTGGAGGCTAGTCATGATAACGCCCTGCGGCTGGTCATGTGCAATGGAAAGATTATTCGGGAGAGGATGCCCATCACTAATGTGGCAGCAACAGTCAACGCCGTGGAGATGTACCATAAACACAGGATAAAGCTGGAAAGAATCCCAATGTGTCCAGAagaaaaagttaaaaaagaaaaatgtgagGATGAATTTGGTGTACAATGCACTATAAAGAAACCAGTCAGTCAAGGTGAAAGTGTGCAGACAGAACTCAGGACAGAGTCGCCACATTTAGCATCTTCAGACAGCGACTCAAAGGCGGGTGATTCTGCTGAGAAGTGTTCATTGGAGTCTGAGAGTTCAGATGGAGAGGACGGAGGAAGCCAGAGAGACTCAGGGACTTTTGTGGAGCATCTAAACAGCCACCGGCATAGCCACCATAAGCAAGCATTAAAACGTGAACGTCCTACCTCACCCAACACTGACTGTGCCATTCAGGGCATGCTGTCGATGGCAGGTCTGCTGTGTCCGCAGGCGTCAGGAGGAGCGGCTGATATTTTACAGCAGCGCTGGTGGGCCAGTCAGGGTAACGGCAGCAGCACCAGCAGCAGCAGTGACATGTGGGACAGCAGTGAACCCTGTTCAGCCCCCCGCAGCCCAGATGCAGAGGACGGCAGTCTGGGAGAGGAGTATTCATACAGAGAGAGCTCGCTTTCTCCTCCACTGCACCCCTCCAAACGACACGCGCCAAACCCCACACCCGTCAGCAACCAGGCCACTAAAGGAAAGCGTCCTAAGAAAGGACAGGCGACGGCTAAACAGAGGCTTGGAAAGATCTTGAAAATGAGCCGTCATAAAGGCTTATTCCTCATGAAGCCGATGGTCTTCCTCATCCCTCAACAGGGCGGCACTCCATTGGACCCTCAGTTCCTCCTCCAGTCGTCTTCAATCTGTGTTTTTCCTCCTCCTCTGATCGTCTCAGGCTGA

Function


GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0071557 histone H3-K27 demethylation biological_process
GO:0033169 histone H3-K9 demethylation biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0007399 nervous system development biological_process
GO:0030901 midbrain development biological_process
GO:0005634 nucleus cellular_component
GO:0071558 histone demethylase activity (H3-K27 specific) molecular_function
GO:0046872 metal ion binding molecular_function
GO:0035575 histone demethylase activity (H4-K20 specific) molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0051213 dioxygenase activity molecular_function
GO:0032454 histone demethylase activity (H3-K9 specific) molecular_function
GO:0051864 histone demethylase activity (H3-K36 specific) molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9829 Enables histone demethylase activity (H3-K27 specific) and histone demethylase activity (H3-K9 specific). Involved in midbrain development. Acts upstream of or within histone H3-K27 demethylation and histone H3-K9 demethylation. Predicted to be located in nucleus. Is expressed in several structures, including anterior axial hypoblast; immature eye; margin; mesoderm; and nervous system. Human ortholog(s) of this gene implicated in melanoma. Orthologous to human KDM7A (lysine demethylase 7A).

Ensembl:

ensembl_id ENSDART00000130409

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00058204 lncRNA downstream 193228 22282725 ~ 22291753 (-) True XLOC_028768
TCONS_00055752 lncRNA downstream 827875 21656245 ~ 21657106 (-) True XLOC_028764
TCONS_00055748 lncRNA downstream 837394 21642885 ~ 21647587 (-) False XLOC_028762
TCONS_00055747 lncRNA downstream 837394 21642885 ~ 21647587 (-) True XLOC_028762
TCONS_00055746 lncRNA downstream 841926 21637724 ~ 21643055 (-) False XLOC_028762
TCONS_00055772 lncRNA upstream 599903 23119419 ~ 23123510 (-) False XLOC_028777
TCONS_00058205 lncRNA upstream 599903 23119419 ~ 23125640 (-) True XLOC_028777
TCONS_00058206 lncRNA upstream 640499 23160015 ~ 23210047 (-) False XLOC_028778
TCONS_00057352 lncRNA upstream 685106 23204622 ~ 23210241 (-) True XLOC_028778
TCONS_00057353 lncRNA upstream 1248962 23768478 ~ 23771489 (-) False XLOC_028784
TCONS_00055761 mRNA downstream 12328 22424451 ~ 22472653 (-) False XLOC_028772
TCONS_00055762 mRNA downstream 12328 22424453 ~ 22472653 (-) False XLOC_028772
TCONS_00055763 mRNA downstream 12328 22426734 ~ 22472653 (-) True XLOC_028772
TCONS_00055760 mRNA downstream 121272 22353465 ~ 22363709 (-) True XLOC_028771
TCONS_00055759 mRNA downstream 149734 22314046 ~ 22335247 (-) True XLOC_028770
TCONS_00055768 mRNA upstream 138956 22658472 ~ 22671469 (-) True XLOC_028774
TCONS_00055769 mRNA upstream 211279 22730795 ~ 22749553 (-) True XLOC_028775
TCONS_00055770 mRNA upstream 235949 22755465 ~ 23083187 (-) False XLOC_028776
TCONS_00055771 mRNA upstream 239402 22758918 ~ 23082985 (-) True XLOC_028776
TCONS_00055775 mRNA upstream 920888 23440404 ~ 23643272 (-) False XLOC_028781
TCONS_00055755 other downstream 247687 22236358 ~ 22237294 (-) True XLOC_028767
TCONS_00055751 other downstream 832349 21651671 ~ 21652632 (-) True XLOC_028763
TCONS_00055737 other downstream 2088811 20396049 ~ 20396170 (-) True XLOC_028756
TCONS_00055724 other downstream 2307113 20176143 ~ 20177868 (-) False XLOC_028749
TCONS_00055714 other downstream 2421747 20049324 ~ 20063234 (-) True XLOC_028742
TCONS_00055773 other upstream 707217 23226733 ~ 23226849 (-) True XLOC_028779
TCONS_00055774 other upstream 899804 23419320 ~ 23419455 (-) True XLOC_028780
TCONS_00055776 other upstream 932301 23451817 ~ 23451931 (-) True XLOC_028782
TCONS_00055780 other upstream 1226527 23746043 ~ 23754271 (-) True XLOC_028783
TCONS_00055802 other upstream 2954690 25474206 ~ 25478995 (-) False XLOC_028796

Expression Profile


Expression of TCONS_00055765 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 6.
End of interactive chart.
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Expression of TCONS_00055765 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 6.
End of interactive chart.