RNA id: TU2442809


Basic Information

Item Value
RNA id TU2442809
length 508
lncRNA type intronic
GC content 0.57
exon number 3
gene id G2136118
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 39726011 ~ 39727848 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgatggcgtttgggaggcagggtgatggcggtgatggcttttgaaggcagggtgatggcagtgatggcttttggaaggcagggtgatggcttttggaaggcagggtgatggcggtgatggcttttggaaggcagggtgatggcagtgatggcttttggaaggcagggtgatggcagtgatggcttttggaaggcagggtgatggcagtgatggcttttggaaggcagggtgatggcggtgatggcttttggaaagcaggtcagggtggtgatggcttttgggaggcaggtcagggcggtgatggcttttgggaggcagggtgatggcttttgggaggcaggtcagggtggtgatggcttttggaaggcggggtgatggcttttgggatgcaggtcaggggggtgatggcttttggaaggcagggtgatggcttttggaaggcaggtcaggggggtgatggcttttggatggcaggtcagggtggtgatggcttttggaaggcagggtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2442772 lncRNA downstream 9931 39715841 ~ 39716080 (-) True LOC118944836
TU2442771 lncRNA downstream 11138 39714554 ~ 39714873 (-) False LOC118944836
TU2442731 lncRNA downstream 12179 39674318 ~ 39713832 (-) False G2136103
TU2442814 lncRNA upstream 31005 39758853 ~ 39921777 (-) False G2136122
TU2442800 lncRNA upstream 33081 39760929 ~ 39762904 (-) True LOC110509148
TU2442823 lncRNA upstream 50778 39778626 ~ 39828229 (-) False LOC110509145
TU2442834 lncRNA upstream 69159 39797007 ~ 39797356 (-) True G2136140
TU2442871 lncRNA upstream 105831 39833679 ~ 39834325 (-) False G2136156
XM_036966346.1 mRNA downstream 8327 39714628 ~ 39717684 (-) False LOC118944836
XM_021590110.2 mRNA downstream 75645 39636463 ~ 39650366 (-) False rab31
XM_021590109.2 mRNA downstream 75659 39636463 ~ 39650352 (-) False rab31
XR_005040126.1 mRNA downstream 143460 39579694 ~ 39582551 (-) True LOC118944811
XR_005040130.1 mRNA downstream 143474 39579694 ~ 39582537 (-) False LOC118944811
XM_036966455.1 mRNA upstream 50704 39778552 ~ 39829206 (-) False LOC110509145
XM_036966457.1 mRNA upstream 50704 39778552 ~ 39829206 (-) False LOC110509145
XM_036966459.1 mRNA upstream 50704 39778552 ~ 39829206 (-) False LOC110509145
XR_005040216.1 mRNA upstream 50704 39778552 ~ 39829206 (-) False LOC110509145
XM_036966458.1 mRNA upstream 50704 39778552 ~ 39829207 (-) False LOC110509145
TU2442402 other downstream 719961 39005461 ~ 39006050 (-) True G2135837
TU2441345 other downstream 1199091 38519571 ~ 38526920 (-) True G2135034
TU2440825 other downstream 1595604 38128129 ~ 38130407 (-) True G2134625
TU2440638 other downstream 1786168 37766718 ~ 37939843 (-) True LOC110509127
TU2439020 other downstream 3168558 36556500 ~ 36557453 (-) True LOC110509111
TU2442821 other upstream 75947 39803795 ~ 39829179 (-) True LOC110509145
TU2442908 other upstream 215305 39943153 ~ 39945834 (-) True G2136189
TU2442946 other upstream 262715 39990563 ~ 39997046 (-) True LOC110508256
TU2442992 other upstream 323791 40051639 ~ 40121899 (-) True G2136243
TU2444084 other upstream 687455 40415303 ~ 40415540 (-) True G2137086

Expression Profile