RNA id: TU2442889


Basic Information

Item Value
RNA id TU2442889
length 1401
lncRNA type intronic
GC content 0.41
exon number 2
gene id G2136172
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 39867458 ~ 39868887 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcaaaagtttggacacatctactcattccagggtttttctttatttttactattttctacattggcaaaataatagtgaagacatcaaaactatgagaaAACACATAATGTCAaacctgcattgttggttaagggcttgtaaagcatttcactaaggtgacaaataacatttgatttggatcatgtagtaaccaaaaaaaagtgttaaacaaatcaaaacatatttataTTTGATGATTCTTAAAATGgctcacactcttggcattattgATGAAGCCTTGTCCAAAAAATTCACCACCTTGTGCACGGTCTAGCCTATGTTCAGTTTCAGAAGGAGAACTTTGATAGCTTTCTACTACTttaattgatttgattaaaaacaatatatttctTGCCCATGAtgtatttatcagagttattgacctcacaataagccagattCAAGTAACTTATattgtggtgctgaaacagaGTAGCGGCATGTGCTCTGTAGAGGGTCCATCACTTGCATGTGCTCTGTAGAGGGTCTATCACTTGCAAGTGCTCTGTAGCGGGTCTATCAGCAACGTCGATAGACTAGAAAAGGCCAGTATCGGCCTGACATATCGGCTCGGCCGTTCGTTTGTTAGTACATGGTGCAAATGTAGTATAGTGCAGTTATATATTTTGCAAGTCAATGAtgcatgtaactgccaaaataaaggaaacaccaagtGTGTTCAATGCAgtttggcatagattctacaagtgttcTGGAACTCTGGCGTAGATCCTACAAGTGTTCTGGAACTCTGGCGTAGATCCTACAAGTGTTCTGGAACTCTGGcgtagattctacaagtgttcTGGAACTCTGGCGTAGATCCTACAAGTGTTCTGGAACTCTGGCGTAGATCCTACAAGTGTTCTGGAACTCTGGCGTCGCATCCCTCCTatattcttccatgagaaattacataatttggtgttttgttgatggtggaaaACATGGTCTCAggcgctgctccagaatctcccataagcgTTCTGTCTGAGAcggctcatcaaaccattcagtgaccactggtgccctgtggatggggggcattgtcattctatgagggcatagccatggtagctaAAATAATGGCCTGCACAGCATttctatacatgaccctaagcatgatgggatgttaattgcttaatgaactcacctgtgtggaagcatctGCTTTTAATACTCTGTGTATCCCTCATTTGTGTTTCCCTTTTTGGGGGTAGTTACCTGTATATGATCCTTTCTTTGATAAGCCACTTTTCATAACTGCTAGTGTAGAGGAcgctgtgtgtcagtgtagatagaggacgctgtgtgtcagtgtagatagaggacgctgtgtgtcagtgtagatagaggacgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2442887 lncRNA downstream 2054 39861263 ~ 39865404 (-) True G2136170
TU2442888 lncRNA downstream 3908 39862937 ~ 39863550 (-) True G2136171
TU2442884 lncRNA downstream 10279 39856807 ~ 39857179 (-) True G2136167
TU2442881 lncRNA downstream 18462 39848488 ~ 39848996 (-) True G2136164
TU2442878 lncRNA downstream 19526 39847109 ~ 39847932 (-) True G2136161
TU2442813 lncRNA upstream 49339 39918226 ~ 39921777 (-) True G2136122
TU2442909 lncRNA upstream 74592 39943479 ~ 39945105 (-) True G2136190
TU2442917 lncRNA upstream 84472 39953359 ~ 39956704 (-) False G2136195
TU2442922 lncRNA upstream 84472 39953359 ~ 39956704 (-) False G2136195
TU2442923 lncRNA upstream 84472 39953359 ~ 39957388 (-) False G2136195
XM_036966458.1 mRNA downstream 38251 39778552 ~ 39829207 (-) False LOC110509145
XM_036966455.1 mRNA downstream 38252 39778552 ~ 39829206 (-) False LOC110509145
XM_036966544.1 mRNA upstream 104480 39973367 ~ 40103148 (-) False LOC110508256
XM_036966545.1 mRNA upstream 106627 39975514 ~ 40103148 (-) False LOC110508256
XM_036966923.1 mRNA upstream 246514 40115401 ~ 40127201 (-) True LOC110509140
XM_036966347.1 mRNA upstream 299524 40168411 ~ 40317511 (-) False LOC110508253
XM_036966056.1 mRNA upstream 583429 40452316 ~ 40563499 (-) False LOC110508251
TU2442821 other downstream 38279 39803795 ~ 39829179 (-) True LOC110509145
TU2442402 other downstream 861408 39005461 ~ 39006050 (-) True G2135837
TU2441345 other downstream 1340538 38519571 ~ 38526920 (-) True G2135034
TU2440825 other downstream 1737051 38128129 ~ 38130407 (-) True G2134625
TU2440638 other downstream 1927615 37766718 ~ 37939843 (-) True LOC110509127
TU2442908 other upstream 74266 39943153 ~ 39945834 (-) True G2136189
TU2442946 other upstream 121676 39990563 ~ 39997046 (-) True LOC110508256
TU2442992 other upstream 182752 40051639 ~ 40121899 (-) True G2136243
TU2444084 other upstream 546416 40415303 ~ 40415540 (-) True G2137086
TU2444112 other upstream 603201 40472088 ~ 40475701 (-) False G2137111

Expression Profile