RNA id: TU2442923


Basic Information

Item Value
RNA id TU2442923
length 1917
lncRNA type antisense_over
GC content 0.44
exon number 3
gene id G2136195
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 39953359 ~ 39957388 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtactacatagagccatgactacatggaactctattccacagtactacatagagccatgactacatggaactctattccacatcaggtaactgacgcagcagtagaatcagatttaaaaaacagataaaaacacaTCTTAAGGAACatagggactgtgaagagacacaggtacaaacacatgcacacgcgTGCTTTGTGATATTGTTGTAGCGTAGCATTAAATATTCagcattgtagatatgtagtgacgtaattatgttttttttaaaatctcGTTTAAAGTGTTtagacaccaggaagagtagctgaggCCTTGGCAGCAGTTAATGGGAATCCCTTCATAAAACACCCATACAGCATGGCCTCTATGCAATCTGTCTAAAGGTAATTTCCCATCTGCAACGTTTACAGTAAATGCAGTATCCTCTGGCGTGGGAACATTGCCTTGACATTTAAATCACGCGGTAATGCTGAATTTCCGccatacggattgaatagagccctaaagcACAGTTGTGATCTGACTGGACTAGCCCGGCGATATCGTCAGGGCACCAGAAGAGGGCGTCTTTGAGGCCATGTTCCTACTTTCTGTCCTCTGCCTTTTTTCTAAACAAGCCTGCGCTGTTAGAAGAGAAACGCAAGGATTTTCAACTTGATCATATGAAATTGAAAAGAACAATTGTTAAACATGAACCACTTTTATTCTCAAAGTCATAAAAACATACAATCTCAAGTTGGAAATATATATTCACTTCCAAACAAATACAAGCCCTGGTGTagaagtgtgcaaagctgactGGACTCCCTGGGATAGTTTTCATAGCTTTAAAGAGTgaacagctagctagctttccTTCATCATTTAGACATTAGCGATCAGTATTAATCTATCGGTCTGAGGAGCACTTTGTGAAAAGCAAGGTGGAAGCTACAGGCTGATTCATCACGTTGATCAATCCTGAGCTCATCAATCATTTAGAACACTGAGAGAATGTCCCAGAGGTTAGGTTACCGAGCAGCAAACAAGATGGACGATACAGGCTGATACACTGAGAGAATGTCCCAGAGGTTAGGTTACCGAGCAGCAAACAAGATGGACGATACAGGCTGATACACTGAGAGAATGTCCCAGAGGTTAGGTTACCGAGCAACAAACAAGATTCTGATTCTGATTCTGGGTCCAGTTCACCTCAATAATTGGCCCACCCGTTATTACAAGCAGACTGACATTGTTGCATTAACAACTATTTGTAAAATCCTTTTTACCCGTTTGGAAAGAATATGTAGAAACTGAATGTAATGCTTGGACATTCATCGGACTGTTGCTTCTGTATTCCTTTTGTCTACATATAATAACTCAAAGTCAATCATTTTCCCATAAaatctgatctaggatctgtcctcCACAACCCTAATCCCACCCCCCAAACACTGCACAAAAAAATCCCTGAGACTGATCTCAGGACCAGTGCCATACCATGAGAGAGGACTTGACGAAGATCCTCTCTGGGTGTTTCTAAATAGTCTAACCtggcttcctctcctcgtctcctctccttctctcctctccttgtctcctctccttcatctgcactgatatACAAAACTGAATAGGTGAGAGAACATAAATATCCCATCCGCCGTAGTCTATATCCTATAATTCACCTATCCTGCGTTTTCAGAAAAATGAagatgaaagagaggagacaaggagaggagagaaggagaggacacgAGGAGAGGACGCCACCTGAGAGTGTttgacatgccccccccccccccccctccccctcaagCAGCTGTCTCCCACCGCTGGCTGAATAGCACCTCCACGACCTTAGGGTCAGCCAGGGTTGAAAGGTCACCTAGATCCTTCTCGTTCCGGGCGATCTGCCTCAGGACCCTCCTCATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2442909 lncRNA downstream 8254 39943479 ~ 39945105 (-) True G2136190
TU2442813 lncRNA downstream 31582 39918226 ~ 39921777 (-) True G2136122
TU2442889 lncRNA downstream 84472 39867458 ~ 39868887 (-) True G2136172
TU2442887 lncRNA downstream 87955 39861263 ~ 39865404 (-) True G2136170
TU2442940 lncRNA upstream 242 39957630 ~ 39958112 (-) True G2136196
TU2442952 lncRNA upstream 10846 39968234 ~ 39969596 (-) False G2136204
TU2442951 lncRNA upstream 11128 39968516 ~ 39969596 (-) True G2136204
TU2442955 lncRNA upstream 18997 39976385 ~ 39980000 (-) False G2136206
TU2442954 lncRNA upstream 20808 39978196 ~ 39980000 (-) True G2136206
XM_036966460.1 mRNA downstream 83423 39843311 ~ 39869936 (-) True ndufv2
XM_036966458.1 mRNA downstream 124152 39778552 ~ 39829207 (-) False LOC110509145
XM_036966457.1 mRNA downstream 124153 39778552 ~ 39829206 (-) False LOC110509145
XM_036966544.1 mRNA upstream 15979 39973367 ~ 40103148 (-) False LOC110508256
XM_036966545.1 mRNA upstream 18126 39975514 ~ 40103148 (-) False LOC110508256
XM_036966923.1 mRNA upstream 158013 40115401 ~ 40127201 (-) True LOC110509140
XM_036966347.1 mRNA upstream 211023 40168411 ~ 40317511 (-) False LOC110508253
XM_036966056.1 mRNA upstream 494928 40452316 ~ 40563499 (-) False LOC110508251
TU2442908 other downstream 7525 39943153 ~ 39945834 (-) True G2136189
TU2442821 other downstream 124180 39803795 ~ 39829179 (-) True LOC110509145
TU2442402 other downstream 947309 39005461 ~ 39006050 (-) True G2135837
TU2441345 other downstream 1426439 38519571 ~ 38526920 (-) True G2135034
TU2440825 other downstream 1822952 38128129 ~ 38130407 (-) True G2134625
TU2442946 other upstream 33175 39990563 ~ 39997046 (-) True LOC110508256
TU2442992 other upstream 94251 40051639 ~ 40121899 (-) True G2136243
TU2444084 other upstream 457915 40415303 ~ 40415540 (-) True G2137086
TU2444112 other upstream 514700 40472088 ~ 40475701 (-) False G2137111
TU2444111 other upstream 514867 40472255 ~ 40475701 (-) False G2137111

Expression Profile