RNA id: TU2442940


Basic Information

Item Value
RNA id TU2442940
length 483
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G2136196
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 39957630 ~ 39958112 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctagtttctaccttcttaacaacactatcaacaaggcaggtcctacaggccctagttttgtggCACCTGGAagactgttcagtcgtgtggtcaggtgccacaaaaagggacttGGGGCAATTGCAgttgtctcagaacagggcagcacggctggcccttaaaagtacacagagagctaacattaataatatgcatgtcaatctctcctggctgaaagtggaggagagattgacttcatcactacttgtttttgtaagaggttgacatgttgaatgcatcgAGCTgtttgtttaaactactggcacacagcacagacacccaacataccccacaagacatgtcaccagaggtctcttcacagtccccaagtccagaacagactatgggaggtgcacagtactacatagagccatgactacatggaactctattccacagtactacatagagccatgactacatggaactctattccacagtact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2442923 lncRNA downstream 242 39953359 ~ 39957388 (-) False G2136195
TU2442917 lncRNA downstream 926 39953359 ~ 39956704 (-) False G2136195
TU2442922 lncRNA downstream 926 39953359 ~ 39956704 (-) False G2136195
TU2442924 lncRNA downstream 926 39953359 ~ 39956704 (-) False G2136195
TU2442925 lncRNA downstream 926 39953359 ~ 39956704 (-) False G2136195
TU2442952 lncRNA upstream 10122 39968234 ~ 39969596 (-) False G2136204
TU2442951 lncRNA upstream 10404 39968516 ~ 39969596 (-) True G2136204
TU2442955 lncRNA upstream 18273 39976385 ~ 39980000 (-) False G2136206
TU2442954 lncRNA upstream 20084 39978196 ~ 39980000 (-) True G2136206
TU2442959 lncRNA upstream 32925 39991037 ~ 39991303 (-) True G2136210
XM_036966460.1 mRNA downstream 87694 39843311 ~ 39869936 (-) True ndufv2
XM_036966458.1 mRNA downstream 128423 39778552 ~ 39829207 (-) False LOC110509145
XM_036966457.1 mRNA downstream 128424 39778552 ~ 39829206 (-) False LOC110509145
XM_036966544.1 mRNA upstream 15255 39973367 ~ 40103148 (-) False LOC110508256
XM_036966545.1 mRNA upstream 17402 39975514 ~ 40103148 (-) False LOC110508256
XM_036966923.1 mRNA upstream 157289 40115401 ~ 40127201 (-) True LOC110509140
XM_036966347.1 mRNA upstream 210299 40168411 ~ 40317511 (-) False LOC110508253
XM_036966056.1 mRNA upstream 494204 40452316 ~ 40563499 (-) False LOC110508251
TU2442908 other downstream 11796 39943153 ~ 39945834 (-) True G2136189
TU2442821 other downstream 128451 39803795 ~ 39829179 (-) True LOC110509145
TU2442402 other downstream 951580 39005461 ~ 39006050 (-) True G2135837
TU2441345 other downstream 1430710 38519571 ~ 38526920 (-) True G2135034
TU2440825 other downstream 1827223 38128129 ~ 38130407 (-) True G2134625
TU2442946 other upstream 32451 39990563 ~ 39997046 (-) True LOC110508256
TU2442992 other upstream 93527 40051639 ~ 40121899 (-) True G2136243
TU2444084 other upstream 457191 40415303 ~ 40415540 (-) True G2137086
TU2444112 other upstream 513976 40472088 ~ 40475701 (-) False G2137111
TU2444111 other upstream 514143 40472255 ~ 40475701 (-) False G2137111

Expression Profile