RNA id: TCONS_00055771


Basic Information

Item Value
RNA id TCONS_00055771
length 3825
RNA type mRNA
GC content 0.53
exon number 22
gene id XLOC_028776
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 22755465 ~ 23083187 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCCAAAAGCCTGAAGAAGAAAAGTCACTGGACTAACAGAGTCCATGAGGTTGTGTTGTCCAGGGGTCCGAGTGGGGATCTAGGGTTCGAGCTGCAGGGAGGCGCGGAGAACGGACAGTTCCCCGTTATTGGAGAGGTGAAACCGGACAGGCGCAAACTGCAGCAGGACGAGCTGCTTCTGGAGGTAAACGATACTCCAGTGGCCGGACTGACCATCAGGGATGTTTGGGCTGTGGTCAGGCACTGCAAAGACCCTGTTCGGTTCAAGTGTGTCAAACAAGgaGGTGTTGTGGATAAAGATCTCAGACAGTACCTCAACCTGCGTTTCCAGAAGGGCTCTTTGGACCACGAGCTGCAGCAAATCATTCGGGACAACCTCTATCTGCGAACAGTACCTTGTACAACCAGGCAGCCCAGAGAAGGAGAAGTTCCTGGAGTAGACTATAATTTTGTGACCGTTGAGCGTTTTGTGGAGTTAGAGAGAAGTGGAGCTTTGCTGGAAAGTGGAACTTATGAAGATAACTATTACGGCACACCAAAGCCCCCGGCGGAGCCCAGTCCACTGCTGCTGAATGTAGCAGAGCAGCTGCTGCCCGGAGCAACACCCACATCACAGGGCAAACGCAGGCGCAACAAGTCCGTCAGCAACATGGAGAAGGCTGGCATTGAGCCTcccgaggaggaggaggaggagagaccCGTCATTAACGGCAATGGAGTCGCCATCACACCAGAGTCAAGTGAACATGAAGACAAGAGTACAGACGCCTCAGGAGAGATGGCTACCACATGCCCCTCCGAGACCTCCACAGATGCCCCTAAAGAAGATACAGAACCACCAAAATCGCCACCCAAACCAGATGAAAACGATGAACTGGGTCCTCTGCCAGATAACTGGGAGATGGCATACACTGAGAAAGGAGAAGTGTACTTTATagaCCACAATACGAAGACAACATCCTGGTTGGACCCCCGGCTCGCAAAGAAAGCAAAGCCCCCCGAAGAATGCAAGGAAAATGagcTTCCTTATGGCTGGGAGAAAATTGATGACCCTATTTATGGAACCTACTATGTTGATCACATAAACCGCAGGACTCAGTTCGAGAACCCAGTTTTAGAGGCCAAGAGAAGATTGCAACACCAGCAGCAGATGCAGAGTCAGGGCTTGTCCTCTCTCCCCCTACCTGCAGTTTACAGAGAGAAGCCTCTGTTCACGAGGGACCCCACGCAACTGAAAGGCAGCTTTCTGTCTACACCTCTGCAGAAAAGCAACATGGGATTTGGCTTCACTATCATTGGCGGTGATGAACCAGATGAGTTTCTACAGGTCAAAAGTGTCATACCGGACGGGCCTGCAGCACAGGATGGCAAAATGGCTACAGGAGATGTGATCGTCTATATCAACGACGTCTGCGTCCTGGGCACCACCCATGCTGATGTTGTAAAGCTATTCCAATCAGTGCCAATTGGACAAAGCGTAACCCTTGTCCTTTGCAGGGGTTACCCTCTTCCTTATGACCCAGAGGATGCAGCAAACACCTTACTATCCCCCCTCGGCCTCATTGATCGCCCTCTGCTGGTCAACGGACGGAATAGCTACGACAGCTACATGGAGTACATCTCCCGCACCGCCCGTTTCGTCGACCCCCTTCAAACAACGATGGTGCAGCCTCACCCTGGAGACACCCACCTGGACGCCGGGCCACTGGAGGACAGCGTCTCGATGGCGTCGTCTGGAGCGGCTGGAGGAGAGCTGCTAACGATTAACATGGTGAAGGGGGCAGATGGGTTTGGATTCACCATAGCAGACAGTAATGGAGGGCAAAGAGTGAAGCAGATTCTGGAGGCTCAAGGATGCCCGGGGCTGTGTGAGGGAGATCTGATTGTGGAAATTAACCAGCAACCTGCGCTAACACTGTCACACACGCAAGTGGTGGAGCTGCTAAAAGAGTGTCCGATTGGGACGGAGGCCACATTGGTCATACAAAGAGGAGGCACAGTTTGTTCTTTTACATTGCAGGTCACTTTTCCCCTTGGAAGACCACTAAACAGGTCGCTCCATATCTGCACTGGCCTTCAGGTCCAGAATTTGACCTGGCCAAACCTGACCCTTATGACCTGTATGAGAAGTCCAGGGCTATCTATGAGAATAGGCGTAACAGAGTTCCAGGAGGTGGAGGTGCACCTACGCAGACAGAAGTCCGGTTTTGGCTTCAGGATCCTGGGCGGAGAGGAACCAGGACAGCCTATCCTGATTGGGGCGATCATTGAGAAGAGTCCTGCTGATAAAGACGGTCGTCTGCGGCCTGGAGATGAGCTGATTTCAGTCGATGGGATCGTGGTGGCTGGAAAACCTCACCGTTACGTCATTGACCTCATGCATGGGGCAGCCCGAACGGGACAGGTCAAGCTCACTGTACGACGAAGAGTTCAGCCCACAGGCGAACCTTTTCCAGAGAACGGCCGCAGTCCTGGATCAACACAACACAGTTCCCCGAGAAGTGACTTCAACTCCCGAATGTTCTGTAACAACTCTGCCCCCTCTCAAAACTCCGCCCCATCCACCACAGGCTCCTCCCCTCCAGacacagcagccaatcagaatgcacAGCCTAATGACGTATCCATCCAGCGCAAGGAGACCGAAGGATTCGGATTTGTCATTATCAGTTCACTAAACAGGCCCGAAACTGCAGCCGCTGCTGctgTGCCTCATAAGATCGGCCGCATCATTGAGGGAAGTCCAGCAGACCACTGTGGGAAGCTTAAGGTTGGAGATCGTATTCTGGCCGTCAACAATCAATCAATCGTCAACATGCCGCATGCCGACATCGTCAAACTGATCAAGGACGCCGGACTAAGTGTCACACTCAGGATCATCCCTCAGGAGGAGACTAACAGCACTCCTTCTGCAGGCAGCTCAGAGAAGCAAAGTCCTATGGCCCAGCCAAGTCCAGTGTGTCAACCTAACACTGTGAACCAGACCGGTGCAGCCCCTCTAGCAAACTCCAATGCTCAACAAAACTCTGCTCCTCAACCCAGTCCCATAAAGCAACCCATTTCAGAAGCACAGCCGAGCCTTGTCACTCAAAACAGCCCAGCCAATCATCCCAGCTCAGTGACCCAACAGAACCCGCAAACTCAGCCAGTACAAACTTACAGCCACGACAGCAGctACAGGTCAGAGGTGAAAGCCAGGCAGGATGTAAAACCCGACATTCGGCAGCCATTTACTGATTACCGTCAACCTCCGGTGGACTACAGACACCCTCCTGTAGCAGATTATAGACAGCCCCCAACGCTGGATTACAGACACCCACCACTGCTGGACTACAGACCGCTACCTGCTGACCCTCGCACCTTTCCCTTACCAGACTACAGGATGCCACAGgattTTGATTTCTTCACGGTTGAGTTGGAAAAGGGGATGAAAGGTTTTGGCTTTAGTATTCGTGGAGGTCGTGAGTATAAGATGGACCTGTTTGTTCTGAGATTGGCTGAAGACGGACCAGCCATACGCAATGGGAGGATGAGGGTTGGTGATCAAATCATTGAGATAAATGGGGAGAGCACGAGGGATATGACCCACGCTCGGGCTATTGAGCTCATCAAATCGGGTGGCCGTAGAGTTCGCCTGTTGCTCAAGAGAGGCACAGGGCAGGTCCCTGAGTATGGAATGGTATCTTCCAGTCTCTCCATGTGCATGAAAAGTGACAACCATGGCTCCCCCTATTTCTTCCTAATGGGCCATCCTAAAGACACGCAGATAGTCCCGCCCCCTGGGATGCTCACCCTACAGCCTCCCCAAGTCTGTCGGAAGTAG

Function

GO:

id name namespace
GO:0043113 receptor clustering biological_process
GO:0039021 pronephric glomerulus development biological_process
GO:0007165 signal transduction biological_process
GO:0030425 dendrite cellular_component
GO:0005911 cell-cell junction cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0005737 cytoplasm cellular_component
GO:0060090 molecular adaptor activity molecular_function
GO:0030159 signaling receptor complex adaptor activity molecular_function
GO:0046332 SMAD binding molecular_function
GO:0031697 beta-1 adrenergic receptor binding molecular_function
GO:0070699 type II activin receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050810-4 Predicted to enable SMAD binding activity; signaling receptor binding activity; and signaling receptor complex adaptor activity. Acts upstream of or within pronephric glomerulus development. Predicted to be located in cell junction. Predicted to be active in cell-cell junction; cytoplasm; and dendrite. Is expressed in pronephric glomerulus. Human ortholog(s) of this gene implicated in nephrotic syndrome type 15. Orthologous to human MAGI2 (membrane associated guanylate kinase, WW and PDZ domain containing 2).

Ensembl:

ensembl_id ENSDART00000133644

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058204 lncRNA downstream 467165 22282725 ~ 22291753 (-) True XLOC_028768
TCONS_00055752 lncRNA downstream 1101812 21656245 ~ 21657106 (-) True XLOC_028764
TCONS_00055748 lncRNA downstream 1111331 21642885 ~ 21647587 (-) False XLOC_028762
TCONS_00055747 lncRNA downstream 1111331 21642885 ~ 21647587 (-) True XLOC_028762
TCONS_00055746 lncRNA downstream 1115863 21637724 ~ 21643055 (-) False XLOC_028762
TCONS_00055772 lncRNA upstream 36434 23119419 ~ 23123510 (-) False XLOC_028777
TCONS_00058205 lncRNA upstream 36434 23119419 ~ 23125640 (-) True XLOC_028777
TCONS_00058206 lncRNA upstream 77030 23160015 ~ 23210047 (-) False XLOC_028778
TCONS_00057352 lncRNA upstream 121637 23204622 ~ 23210241 (-) True XLOC_028778
TCONS_00057353 lncRNA upstream 685493 23768478 ~ 23771489 (-) False XLOC_028784
TCONS_00055769 mRNA downstream 9365 22730795 ~ 22749553 (-) True XLOC_028775
TCONS_00055768 mRNA downstream 87449 22658472 ~ 22671469 (-) True XLOC_028774
TCONS_00055766 mRNA downstream 239393 22492355 ~ 22519525 (-) False XLOC_028773
TCONS_00055767 mRNA downstream 239393 22505617 ~ 22519525 (-) True XLOC_028773
TCONS_00055765 mRNA downstream 239402 22484981 ~ 22519516 (-) False XLOC_028773
TCONS_00055775 mRNA upstream 357419 23440404 ~ 23643272 (-) False XLOC_028781
TCONS_00055777 mRNA upstream 372613 23455598 ~ 23643272 (-) True XLOC_028781
TCONS_00055778 mRNA upstream 657670 23740655 ~ 23759192 (-) False XLOC_028783
TCONS_00055779 mRNA upstream 660691 23743676 ~ 23759213 (-) False XLOC_028783
TCONS_00055781 mRNA upstream 688049 23771034 ~ 23858900 (-) False XLOC_028784
TCONS_00055755 other downstream 521624 22236358 ~ 22237294 (-) True XLOC_028767
TCONS_00055751 other downstream 1106286 21651671 ~ 21652632 (-) True XLOC_028763
TCONS_00055737 other downstream 2362748 20396049 ~ 20396170 (-) True XLOC_028756
TCONS_00055724 other downstream 2581050 20176143 ~ 20177868 (-) False XLOC_028749
TCONS_00055714 other downstream 2695684 20049324 ~ 20063234 (-) True XLOC_028742
TCONS_00055773 other upstream 143748 23226733 ~ 23226849 (-) True XLOC_028779
TCONS_00055774 other upstream 336335 23419320 ~ 23419455 (-) True XLOC_028780
TCONS_00055776 other upstream 368832 23451817 ~ 23451931 (-) True XLOC_028782
TCONS_00055780 other upstream 663058 23746043 ~ 23754271 (-) True XLOC_028783
TCONS_00055802 other upstream 2391221 25474206 ~ 25478995 (-) False XLOC_028796

Expression Profile

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