RNA id: TU2442955


Basic Information

Item Value
RNA id TU2442955
length 1280
lncRNA type intronic
GC content 0.48
exon number 3
gene id G2136206
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 39976385 ~ 39980000 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgtagttcctccacctgtttcctcaccctgtagttcctccacctgtttcatcacactgtagttcctccacctgtttcatcacactgtagttcctccacctgtttcatcccactctagttcctccacctgtttcatcaccctgtagttcctccacctgtttcatcacactgtagttcctccacctgtttcatcaccctgtagttcctccacctgtttcatcaccctgtagttcctccacctgtttcctcaccctgtagttcctccacctgtttcatcccactgtagttcctccacctgtttcatcccactgtagttcctccacctgtttcatcacactgtagttcctccacctgtttcatcacactgtagttcctccacctgtttcatcacactgtaattcctccacctgtttcatcaccctgtagttcctccacctgtttcatcacactgtagttcctccacctgtttcatcacactgtagttcctccacctgtttcatcacactgtagttcctccacctgtttcatcacactgtagttcctccacctgtttcatcatACTGTAGTTCCTCCACATGGTGTTTTATCaccctgtagttcctccacctgtttcatcacactgtagttcctccacctgtttcatcacactgtagttcctccacatggtgtttcatcaccctgtagttcctccacctgtttcatcaccctgtagttcctccacctgtttcatcaccctgtagttcctccacctgtttcatcaccctgtagttcctccacctgtttcatcaccctgtagttcctccacctgtttcatcaccctgtagttcctccacctgtttcatcaccctgtagttcccccacctgtttcatcaccctgtagttcctccacctgtttcatcaccctgtagttcctccacctgtttcatcacactgtagttcctccacctgtttcatcacactgtagttcctccacctgtttcatcacactgtaattcctccacctgtttcatcaccctgtagttcctccacctgtttcatcacactgtagttcctccacctgtttcatcacactgtagttcctccacctgtttcatcacactgtagttcctccacctgtttcatcacactgtagttcctccacctgtttcatcaccctgtagttcctccacctgtttcatcacactgtagttcctccacctgtttcatcacactgtagttcctccacctgtttcatcacactgtagttcctccacctgtttcatcacactgtagttcctcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2442952 lncRNA downstream 6789 39968234 ~ 39969596 (-) False G2136204
TU2442951 lncRNA downstream 6789 39968516 ~ 39969596 (-) True G2136204
TU2442940 lncRNA downstream 18273 39957630 ~ 39958112 (-) True G2136196
TU2442935 lncRNA downstream 19681 39953359 ~ 39956704 (-) False G2136195
TU2442959 lncRNA upstream 11037 39991037 ~ 39991303 (-) True G2136210
TU2442968 lncRNA upstream 24627 40004627 ~ 40005054 (-) True G2136219
TU2442971 lncRNA upstream 34763 40014763 ~ 40014983 (-) True G2136222
TU2442972 lncRNA upstream 35806 40015806 ~ 40016113 (-) True G2136223
TU2442981 lncRNA upstream 62598 40042598 ~ 40042858 (-) True G2136232
XM_036966460.1 mRNA downstream 106449 39843311 ~ 39869936 (-) True ndufv2
XM_036966458.1 mRNA downstream 147178 39778552 ~ 39829207 (-) False LOC110509145
XM_036966457.1 mRNA downstream 147179 39778552 ~ 39829206 (-) False LOC110509145
XM_036966923.1 mRNA upstream 135401 40115401 ~ 40127201 (-) True LOC110509140
XM_036966347.1 mRNA upstream 188411 40168411 ~ 40317511 (-) False LOC110508253
XM_036966056.1 mRNA upstream 472316 40452316 ~ 40563499 (-) False LOC110508251
XM_036966055.1 mRNA upstream 472316 40452316 ~ 40587932 (-) True LOC110508251
XR_005040272.1 mRNA upstream 617260 40597260 ~ 40599320 (-) True LOC118944871
TU2442908 other downstream 30551 39943153 ~ 39945834 (-) True G2136189
TU2442821 other downstream 147206 39803795 ~ 39829179 (-) True LOC110509145
TU2442402 other downstream 970335 39005461 ~ 39006050 (-) True G2135837
TU2441345 other downstream 1449465 38519571 ~ 38526920 (-) True G2135034
TU2440825 other downstream 1845978 38128129 ~ 38130407 (-) True G2134625
TU2442946 other upstream 10563 39990563 ~ 39997046 (-) True LOC110508256
TU2442992 other upstream 71639 40051639 ~ 40121899 (-) True G2136243
TU2444084 other upstream 435303 40415303 ~ 40415540 (-) True G2137086
TU2444112 other upstream 492088 40472088 ~ 40475701 (-) False G2137111
TU2444111 other upstream 492255 40472255 ~ 40475701 (-) False G2137111

Expression Profile