RNA id: TU2442990



Basic Information


Item Value
RNA id TU2442990
length 258
lncRNA type intronic
GC content 0.49
exon number 1
gene id G2136241
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 40049276 ~ 40049533 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


caaAGTCAGGCACCCCAATCTCTTTCTCCtgtgaatgacggggatgagggcctatTTGgatgtctggagtaaatccctctcgtccgactcattaaagaaacaTTTTtcgtccagttcaaggtgagtaatcgctgctctgatttccagaagctctgttcaaaatagcacggttggttaagagcccatgaaacggcagccatcctctccggcgcCATTGATCACACCTTGCTACTGTAGGACTGACCAAGGACAGACCAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2442988 lncRNA downstream 1190 40047886 ~ 40048086 (-) True G2136239
TU2442986 lncRNA downstream 2231 40046406 ~ 40047045 (-) True G2136237
TU2442985 lncRNA downstream 3267 40045802 ~ 40046009 (-) True G2136236
TU2442984 lncRNA downstream 4065 40044996 ~ 40045211 (-) True G2136235
TU2442983 lncRNA downstream 5347 40043678 ~ 40043929 (-) True G2136234
TU2442997 lncRNA upstream 17681 40067214 ~ 40067971 (-) True G2136247
TU2443006 lncRNA upstream 24839 40074372 ~ 40074708 (-) True G2136255
TU2443010 lncRNA upstream 33460 40082993 ~ 40084214 (-) False G2136259
TU2443011 lncRNA upstream 33460 40082993 ~ 40083732 (-) True G2136259
TU2443018 lncRNA upstream 55113 40104646 ~ 40109801 (-) False G2136262
XM_036966460.1 mRNA downstream 179340 39843311 ~ 39869936 (-) True ndufv2
XM_036966458.1 mRNA downstream 220069 39778552 ~ 39829207 (-) False LOC110509145
XM_036966457.1 mRNA downstream 220070 39778552 ~ 39829206 (-) False LOC110509145
XM_036966923.1 mRNA upstream 65868 40115401 ~ 40127201 (-) True LOC110509140
XM_036966347.1 mRNA upstream 118878 40168411 ~ 40317511 (-) False LOC110508253
XM_036966056.1 mRNA upstream 402783 40452316 ~ 40563499 (-) False LOC110508251
XM_036966055.1 mRNA upstream 402783 40452316 ~ 40587932 (-) True LOC110508251
XR_005040272.1 mRNA upstream 547727 40597260 ~ 40599320 (-) True LOC118944871
TU2442946 other downstream 52230 39990563 ~ 39997046 (-) True LOC110508256
TU2442908 other downstream 103442 39943153 ~ 39945834 (-) True G2136189
TU2442821 other downstream 220097 39803795 ~ 39829179 (-) True LOC110509145
TU2442402 other downstream 1043226 39005461 ~ 39006050 (-) True G2135837
TU2441345 other downstream 1522356 38519571 ~ 38526920 (-) True G2135034
TU2442992 other upstream 2106 40051639 ~ 40121899 (-) True G2136243
TU2444084 other upstream 365770 40415303 ~ 40415540 (-) True G2137086
TU2444112 other upstream 422555 40472088 ~ 40475701 (-) False G2137111
TU2444111 other upstream 422722 40472255 ~ 40475701 (-) False G2137111
TU2444115 other upstream 422722 40472255 ~ 40475701 (-) False G2137111

Expression Profile