RNA id: TU2443011



Basic Information


Item Value
RNA id TU2443011
length 233
lncRNA type intronic
GC content 0.49
exon number 2
gene id G2136259
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 40082993 ~ 40084214 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gatgggatgagacagacagatatgagGTGTAGAGGGAGGTTGGGATGAGGTGTAGAGTGAGgatgggatgagacagacagataggaggTGTAGAGTGAGgatgggatgagacagacagataggagGTGTAGAGATgatgggatgagacagacagataggaggTGTAGAGATgatgggatgagacagacagataggaggTGTAGAGTGAGgatgggatgagacagacagatagg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2443006 lncRNA downstream 8285 40074372 ~ 40074708 (-) True G2136255
TU2442997 lncRNA downstream 15022 40067214 ~ 40067971 (-) True G2136247
TU2442990 lncRNA downstream 33460 40049276 ~ 40049533 (-) True G2136241
TU2442988 lncRNA downstream 34907 40047886 ~ 40048086 (-) True G2136239
TU2442986 lncRNA downstream 35948 40046406 ~ 40047045 (-) True G2136237
TU2443018 lncRNA upstream 20914 40104646 ~ 40109801 (-) False G2136262
TU2443019 lncRNA upstream 21412 40105144 ~ 40109801 (-) True G2136262
TU2443051 lncRNA upstream 54535 40138267 ~ 40140732 (-) True G2136276
TU2443037 lncRNA upstream 69873 40153605 ~ 40154931 (-) True G2136274
TU2443038 lncRNA upstream 71463 40155195 ~ 40156240 (-) False G2136275
XM_036966460.1 mRNA downstream 213057 39843311 ~ 39869936 (-) True ndufv2
XM_036966458.1 mRNA downstream 253786 39778552 ~ 39829207 (-) False LOC110509145
XM_036966457.1 mRNA downstream 253787 39778552 ~ 39829206 (-) False LOC110509145
XM_036966923.1 mRNA upstream 31669 40115401 ~ 40127201 (-) True LOC110509140
XM_036966347.1 mRNA upstream 84679 40168411 ~ 40317511 (-) False LOC110508253
XM_036966056.1 mRNA upstream 368584 40452316 ~ 40563499 (-) False LOC110508251
XM_036966055.1 mRNA upstream 368584 40452316 ~ 40587932 (-) True LOC110508251
XR_005040272.1 mRNA upstream 513528 40597260 ~ 40599320 (-) True LOC118944871
TU2442946 other downstream 85947 39990563 ~ 39997046 (-) True LOC110508256
TU2442908 other downstream 137159 39943153 ~ 39945834 (-) True G2136189
TU2442821 other downstream 253814 39803795 ~ 39829179 (-) True LOC110509145
TU2442402 other downstream 1076943 39005461 ~ 39006050 (-) True G2135837
TU2441345 other downstream 1556073 38519571 ~ 38526920 (-) True G2135034
TU2444084 other upstream 331571 40415303 ~ 40415540 (-) True G2137086
TU2444112 other upstream 388356 40472088 ~ 40475701 (-) False G2137111
TU2444111 other upstream 388523 40472255 ~ 40475701 (-) False G2137111
TU2444115 other upstream 388523 40472255 ~ 40475701 (-) False G2137111
TU2444116 other upstream 388523 40472255 ~ 40475701 (-) False G2137111

Expression Profile