RNA id: TCONS_00058206


Basic Information

Item Value
RNA id TCONS_00058206
length 820
lncRNA type inter_gene
GC content 0.43
exon number 5
gene id XLOC_028778
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 23160015 ~ 23210241 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACGTGATTACCAGTTGTCAAAAGAGACACGTTACCAGTTTAAAGCTCCTTTGAGGATGGAGATCTGGAGGCTCAGTGAGTGTCTGAGAGCTGAGTGACACAACATTTAACTTTAGTCCTGATAACAGACAGAGATCAGCCTCTCTTCATGTGTGAAGACGCATTTGGGATTACAGATGTCAGTTTTGGGATATTCTTCATACTGCACACCCAAGATGACAGCTGAGAAGCCAGAAGCAAGACAGTCATACATGATTGGACATTTGAAGCAACATTATGAACAACTGCCGAGACAACAATCAGTCAGCTTTCAGAAGTGGatattcagcagagaaatccctGCCTGTCCATCAGCAAAGCCCAGCAGCTTGTTAGAACTGCTTCCATCATCTATCCTCATTCTGTTGGATCTGTCGGCAACACACCTGGAGAGGGGGAAAATGCTTTACACAACGTCCACTTCAGGACCAACCCTAATGTGACGGATCTGGGCCTATTTAATGGTGACAGATGGATGACATTATAGACCTCGACTAACCTTTAAAGTTGGTTGATGAATATGTGGAGTGTCGAATCGTCTTTTATCTTTGGCCAAACGAGGCCTCGATGTCCGTTATGAAGATTAAATCGGCTTGTATGATGGTGCTAATGTTGTCTAGGTTTAATAATGTTACAGCGTTTGTATGAAGATACATGAAATGAAGATTGATTGTGTGTGGAATTACACTCTCATTCTGTGCTCATTTTATTCGGCCGCCTTACAGCAAAAACATCTGCTAAACCGATTTGAGTAGCCAATGTAATGTAACACGTCATTAAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058205 lncRNA downstream 34375 23119419 ~ 23125640 (-) True XLOC_028777
TCONS_00055772 lncRNA downstream 36505 23119419 ~ 23123510 (-) False XLOC_028777
TCONS_00058204 lncRNA downstream 868262 22282725 ~ 22291753 (-) True XLOC_028768
TCONS_00055752 lncRNA downstream 1502909 21656245 ~ 21657106 (-) True XLOC_028764
TCONS_00055748 lncRNA downstream 1512428 21642885 ~ 21647587 (-) False XLOC_028762
TCONS_00057353 lncRNA upstream 558431 23768478 ~ 23771489 (-) False XLOC_028784
TCONS_00058207 lncRNA upstream 1043719 24253766 ~ 24269283 (-) False XLOC_028786
TCONS_00058208 lncRNA upstream 1043719 24253766 ~ 24309850 (-) False XLOC_028786
TCONS_00058209 lncRNA upstream 1043719 24253766 ~ 24376025 (-) True XLOC_028786
TCONS_00058210 lncRNA upstream 1291082 24501129 ~ 24618981 (-) False XLOC_028787
TCONS_00055770 mRNA downstream 76828 22755465 ~ 23083187 (-) False XLOC_028776
TCONS_00055771 mRNA downstream 77030 22758918 ~ 23082985 (-) True XLOC_028776
TCONS_00055769 mRNA downstream 410462 22730795 ~ 22749553 (-) True XLOC_028775
TCONS_00055768 mRNA downstream 488546 22658472 ~ 22671469 (-) True XLOC_028774
TCONS_00055766 mRNA downstream 640490 22492355 ~ 22519525 (-) False XLOC_028773
TCONS_00055775 mRNA upstream 230357 23440404 ~ 23643272 (-) False XLOC_028781
TCONS_00055777 mRNA upstream 245551 23455598 ~ 23643272 (-) True XLOC_028781
TCONS_00055778 mRNA upstream 530608 23740655 ~ 23759192 (-) False XLOC_028783
TCONS_00055779 mRNA upstream 533629 23743676 ~ 23759213 (-) False XLOC_028783
TCONS_00055781 mRNA upstream 560987 23771034 ~ 23858900 (-) False XLOC_028784
TCONS_00055755 other downstream 922721 22236358 ~ 22237294 (-) True XLOC_028767
TCONS_00055751 other downstream 1507383 21651671 ~ 21652632 (-) True XLOC_028763
TCONS_00055737 other downstream 2763845 20396049 ~ 20396170 (-) True XLOC_028756
TCONS_00055724 other downstream 2982147 20176143 ~ 20177868 (-) False XLOC_028749
TCONS_00055714 other downstream 3096781 20049324 ~ 20063234 (-) True XLOC_028742
TCONS_00055773 other upstream 16686 23226733 ~ 23226849 (-) True XLOC_028779
TCONS_00055774 other upstream 209273 23419320 ~ 23419455 (-) True XLOC_028780
TCONS_00055776 other upstream 241770 23451817 ~ 23451931 (-) True XLOC_028782
TCONS_00055780 other upstream 535996 23746043 ~ 23754271 (-) True XLOC_028783
TCONS_00055802 other upstream 2264159 25474206 ~ 25478995 (-) False XLOC_028796

Expression Profile

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