RNA id: TU2443051


Basic Information

Item Value
RNA id TU2443051
length 2120
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G2136276
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 40138267 ~ 40140732 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agttaagggcttgtaagtaagcatttcactgtaaggtctacaacttgttgtattcagcatttcactgtaaaggtctactcttgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaaggtctactcttgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtcaggtctactacacctgttgtattcagcatttcactgtatggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaagtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtcaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtcaggtctactacacctgttgtattcagcatttcactgtcaggtctactacacctgttgtattcagcatttcactgtcaggtctactacacctgttgtattcagcatttcactgtcaggtctactacacctgttgtattcagcatttcactgtcaggtctactacacctgttgtattcagcatttcactgtcaggtctactacacctgttgtattcagcatttcactgtcaggtctactacacctgttgtattcagcatttcactgtcaggtctactacacctgttgtattcagcatttcactgtaaggtctacaacttgttgtattcagcatttcactgtaaggtctacaacttgttgtattcagcatttcactgtaaggtctacaacttgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctacaacttgttgtattcagcatttcactgtaaggtctacaacttgttgtattcagcatttcactgtaaggtctacaacttgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtcaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcattttactgtaaggtctacctacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtcaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcacggtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtcaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttaactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcaggatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctacctacacctgttgtattcagcatttcactgtgaggtctacctaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2443018 lncRNA downstream 28466 40104646 ~ 40109801 (-) False G2136262
TU2443019 lncRNA downstream 28466 40105144 ~ 40109801 (-) True G2136262
TU2443010 lncRNA downstream 54053 40082993 ~ 40084214 (-) False G2136259
TU2443011 lncRNA downstream 54535 40082993 ~ 40083732 (-) True G2136259
TU2443006 lncRNA downstream 63559 40074372 ~ 40074708 (-) True G2136255
TU2443037 lncRNA upstream 12873 40153605 ~ 40154931 (-) True G2136274
TU2443038 lncRNA upstream 14463 40155195 ~ 40156240 (-) False G2136275
TU2443039 lncRNA upstream 14463 40155195 ~ 40156240 (-) False G2136275
TU2443040 lncRNA upstream 14463 40155195 ~ 40156240 (-) False G2136275
TU2443041 lncRNA upstream 14463 40155195 ~ 40156240 (-) False G2136275
XM_036966923.1 mRNA downstream 11066 40115401 ~ 40127201 (-) True LOC110509140
XM_036966544.1 mRNA downstream 35119 39973367 ~ 40103148 (-) False LOC110508256
XM_036966545.1 mRNA downstream 35119 39975514 ~ 40103148 (-) False LOC110508256
XM_036966460.1 mRNA downstream 268331 39843311 ~ 39869936 (-) True ndufv2
XM_036966458.1 mRNA downstream 309060 39778552 ~ 39829207 (-) False LOC110509145
XM_036966347.1 mRNA upstream 27679 40168411 ~ 40317511 (-) False LOC110508253
XM_036966056.1 mRNA upstream 311584 40452316 ~ 40563499 (-) False LOC110508251
XM_036966055.1 mRNA upstream 311584 40452316 ~ 40587932 (-) True LOC110508251
XR_005040272.1 mRNA upstream 456528 40597260 ~ 40599320 (-) True LOC118944871
XR_005040257.1 mRNA upstream 464484 40605216 ~ 40608134 (-) True LOC118944865
TU2442992 other downstream 16368 40051639 ~ 40121899 (-) True G2136243
TU2442946 other downstream 141221 39990563 ~ 39997046 (-) True LOC110508256
TU2442908 other downstream 192433 39943153 ~ 39945834 (-) True G2136189
TU2442821 other downstream 309088 39803795 ~ 39829179 (-) True LOC110509145
TU2442402 other downstream 1132217 39005461 ~ 39006050 (-) True G2135837
TU2444084 other upstream 274571 40415303 ~ 40415540 (-) True G2137086
TU2444112 other upstream 331356 40472088 ~ 40475701 (-) False G2137111
TU2444111 other upstream 331523 40472255 ~ 40475701 (-) False G2137111
TU2444115 other upstream 331523 40472255 ~ 40475701 (-) False G2137111
TU2444116 other upstream 331523 40472255 ~ 40475701 (-) False G2137111

Expression Profile