RNA id: TU2443049


Basic Information

Item Value
RNA id TU2443049
length 806
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G2136275
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 40155195 ~ 40156240 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGAATaacttttctttattttacttacAGGTGTAGAAATCATGAATTGTCAAGTCAGAATTTATTGGCCTTTATTGATAAGCCATTATACATGACTATAAATGCTTTGTAATGCTAGTTAGCAGAGTTCAGTGTTCACTAGCAACACATGGAGACGGAGGAACATCCCATTCAACACGACTCCATTTACAAAGGTAAGAGATTTGTCCCTTTTATTTTCCCTGGATGGACACATGTATGTTGTACACTCCCCATTTTGGATTGTGACTAATGcacaaaacacagaacatcaCAACAGAAGGAGCACCGGTGTGCATTAAAACCAGGACATTGCTAAGGAAAGGACAGAGGCATTGGTAGACGATCTAACTCTCTCATTAAAATACACACAGAGACTTAAGAAGCTCGACATCCATCACAAGGTCCTTCCTTTCCACGGTTCATTTCTGGGAGAACCTTGTTAGAATTAACTCTCGGGCTACGTCCCAAACATCTAGTATTCTCAGGGACTACAACAACATGACACGGCTGTAACCACGGTACTGTAGGTACAGGGACTACAACAACATGACACGGCTGTAACCACGGTACTGTAGGTACAGGGACTACAACAACATGACACGGCTGTAACCATGGTACTGTAGGTACAGGGACTACAACAACACGACACGGCTGTAACCACGGTACTGTAGGTACAGGGACTACAACAACATGACACGGCTGTAACCACAGACGATGAGGTTAATTAAATAAATCAATGAAATGGGAGGTAATTTTTCTTTCAAGGAATGCACATGAAATACATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2443037 lncRNA downstream 264 40153605 ~ 40154931 (-) True G2136274
TU2443051 lncRNA downstream 14463 40138267 ~ 40140732 (-) True G2136276
TU2443018 lncRNA downstream 45394 40104646 ~ 40109801 (-) False G2136262
TU2443019 lncRNA downstream 45394 40105144 ~ 40109801 (-) True G2136262
TU2443011 lncRNA downstream 71463 40082993 ~ 40083732 (-) True G2136259
TU2443052 lncRNA upstream 35754 40191994 ~ 40194404 (-) True G2136277
TU2443094 lncRNA upstream 44687 40200927 ~ 40201199 (-) True G2136311
TU2443103 lncRNA upstream 72235 40228475 ~ 40229161 (-) True LOC110508253
TU2443110 lncRNA upstream 77521 40233761 ~ 40234070 (-) True G2136325
TU2443112 lncRNA upstream 78152 40234392 ~ 40234810 (-) True G2136327
XM_036966923.1 mRNA downstream 27994 40115401 ~ 40127201 (-) True LOC110509140
XM_036966544.1 mRNA downstream 52047 39973367 ~ 40103148 (-) False LOC110508256
XM_036966545.1 mRNA downstream 52047 39975514 ~ 40103148 (-) False LOC110508256
XM_036966460.1 mRNA downstream 285259 39843311 ~ 39869936 (-) True ndufv2
XM_036966458.1 mRNA downstream 325988 39778552 ~ 39829207 (-) False LOC110509145
XM_036966347.1 mRNA upstream 12171 40168411 ~ 40317511 (-) False LOC110508253
XM_036966056.1 mRNA upstream 296076 40452316 ~ 40563499 (-) False LOC110508251
XM_036966055.1 mRNA upstream 296076 40452316 ~ 40587932 (-) True LOC110508251
XR_005040272.1 mRNA upstream 441020 40597260 ~ 40599320 (-) True LOC118944871
XR_005040257.1 mRNA upstream 448976 40605216 ~ 40608134 (-) True LOC118944865
TU2442992 other downstream 33296 40051639 ~ 40121899 (-) True G2136243
TU2442946 other downstream 158149 39990563 ~ 39997046 (-) True LOC110508256
TU2442908 other downstream 209361 39943153 ~ 39945834 (-) True G2136189
TU2442821 other downstream 326016 39803795 ~ 39829179 (-) True LOC110509145
TU2442402 other downstream 1149145 39005461 ~ 39006050 (-) True G2135837
TU2444084 other upstream 259063 40415303 ~ 40415540 (-) True G2137086
TU2444112 other upstream 315848 40472088 ~ 40475701 (-) False G2137111
TU2444111 other upstream 316015 40472255 ~ 40475701 (-) False G2137111
TU2444115 other upstream 316015 40472255 ~ 40475701 (-) False G2137111
TU2444116 other upstream 316015 40472255 ~ 40475701 (-) False G2137111

Expression Profile