RNA id: TU2443052


Basic Information

Item Value
RNA id TU2443052
length 990
lncRNA type intronic
GC content 0.32
exon number 2
gene id G2136277
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 40191994 ~ 40194404 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taaaattttttgagcatgacaaattcgtgatggtacctgcccattgaaacatattgcaaatgcacagtgactttgaaaaagtaaggaaacataaacaaaaaaacatcaacacattttttgggtaaccagttgcatattttagatcacaagatgacaaaggtatagtttgagcaaagtaaagtttgaattttgagcatgacaaattcgtgatggtatctgcccattaaaacatattgcaaatgcacagtgactttgaaaaagtaaggaaacataaacaaaaaaaatctaaaaaattttgttgcacattttagatcatcagttgcacggaggaaaatcgttacttttgactttgacttttgacttcctatgacatcatattgcaaatggagaaaacatatgccttatgcacaagtaaaaaaaatatgataataaagcatgactaaagtatgttgataaagttcttatacatgtgttattgacacaaaaatcgaaagaattttgaaaaaaggtcaagaaagcacttttttaaggatgtatgaagttttttaccaaattttgacatttttgacttttgacttttgacttcctatgaaatcatattgcaaatggacaaaacatatgccttatgcgcatgtacttaaaaaatatatatatatgatgacaaaagtatactcatacagttcttacacatgtgtaattgacaaaaaactcgaaagaatttcgaaaaaaggtccagaaagcacttttttaaggggttttaagttttttttttttaatttcatttttcaaaatttggcttttggatgttgacttgggtgccatttgcaatatgaaatgccccggtggaacgcacacgccccctattggaattttgaagtgttacaattggcaattgccatatggcatttgcaatatactttgcatgaatcaacgccaaattgggtggtattggccatcgtgtatatggtttgtccaatgccaatatcccgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2443038 lncRNA downstream 35754 40155195 ~ 40156240 (-) False G2136275
TU2443039 lncRNA downstream 35754 40155195 ~ 40156240 (-) False G2136275
TU2443040 lncRNA downstream 35754 40155195 ~ 40156240 (-) False G2136275
TU2443041 lncRNA downstream 35754 40155195 ~ 40156240 (-) False G2136275
TU2443042 lncRNA downstream 35754 40155195 ~ 40156240 (-) False G2136275
TU2443094 lncRNA upstream 6523 40200927 ~ 40201199 (-) True G2136311
TU2443103 lncRNA upstream 34071 40228475 ~ 40229161 (-) True LOC110508253
TU2443110 lncRNA upstream 39357 40233761 ~ 40234070 (-) True G2136325
TU2443112 lncRNA upstream 39988 40234392 ~ 40234810 (-) True G2136327
TU2443128 lncRNA upstream 59314 40253718 ~ 40254415 (-) True G2136342
XM_036966923.1 mRNA downstream 64793 40115401 ~ 40127201 (-) True LOC110509140
XM_036966544.1 mRNA downstream 88846 39973367 ~ 40103148 (-) False LOC110508256
XM_036966545.1 mRNA downstream 88846 39975514 ~ 40103148 (-) False LOC110508256
XM_036966460.1 mRNA downstream 322058 39843311 ~ 39869936 (-) True ndufv2
XM_036966458.1 mRNA downstream 362787 39778552 ~ 39829207 (-) False LOC110509145
XM_036966056.1 mRNA upstream 257912 40452316 ~ 40563499 (-) False LOC110508251
XM_036966055.1 mRNA upstream 257912 40452316 ~ 40587932 (-) True LOC110508251
XR_005040272.1 mRNA upstream 402856 40597260 ~ 40599320 (-) True LOC118944871
XR_005040257.1 mRNA upstream 410812 40605216 ~ 40608134 (-) True LOC118944865
XM_036966860.1 mRNA upstream 489987 40684391 ~ 40739695 (-) False zfyve9a
TU2442992 other downstream 70095 40051639 ~ 40121899 (-) True G2136243
TU2442946 other downstream 194948 39990563 ~ 39997046 (-) True LOC110508256
TU2442908 other downstream 246160 39943153 ~ 39945834 (-) True G2136189
TU2442821 other downstream 362815 39803795 ~ 39829179 (-) True LOC110509145
TU2442402 other downstream 1185944 39005461 ~ 39006050 (-) True G2135837
TU2444084 other upstream 220899 40415303 ~ 40415540 (-) True G2137086
TU2444112 other upstream 277684 40472088 ~ 40475701 (-) False G2137111
TU2444111 other upstream 277851 40472255 ~ 40475701 (-) False G2137111
TU2444115 other upstream 277851 40472255 ~ 40475701 (-) False G2137111
TU2444116 other upstream 277851 40472255 ~ 40475701 (-) False G2137111

Expression Profile