RNA id: TU2444112



Basic Information


Item Value
RNA id TU2444112
length 588
RNA type TUCP
GC content 0.55
exon number 3
gene id G2137111
representative False

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 40472088 ~ 40475701 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggggggggacctgatcctagataatAAGAAATAAGACTAGCGGGCCTCCCGGGGgccgcagtggttaagggctgtactgcagctccagctgtgccaccagagactctgggttcgcgcccaggctctgttgtaaccggccgcgaccgggaggtccatggggtgacgcacaattggcctagtgtcgcccgggttagggagggcttggtcggtagggatgtccttgtctcatcgcgcaccagcgactcctgtggcgggccgggcgcagtgcacgctaaccaaggttgccaggtgcacggtgtttcctccgacacattggtgcggctggcttccgggttggatgcgcgctgtgttaagaagcagtgcggcttggttgggtatcggaggacgcatgactttcaaccttcgtctctcccgagcccgtacgggagttttagcgatgagacaagatagtagctactacaacaattggacaccacgaaattggggagaaaaaggggtaaaaattcaaaaaataaaagaatataaataaataattaagactagatggacaggggggacctgatcctagatcataataaacaagactag

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU2444108 lncRNA downstream 4619 40459142 ~ 40467469 (-) True G2137108
TU2444046 lncRNA downstream 20459 40450435 ~ 40451629 (-) True G2137056
TU2444091 lncRNA downstream 49025 40422365 ~ 40423063 (-) True G2137092
TU2444086 lncRNA downstream 53033 40418854 ~ 40419055 (-) True G2137088
TU2444085 lncRNA downstream 55894 40415982 ~ 40416194 (-) True G2137087
TU2444134 lncRNA upstream 25654 40501355 ~ 40508755 (-) True G2137120
TU2444150 lncRNA upstream 54562 40530263 ~ 40533398 (-) True G2137130
TU2444160 lncRNA upstream 84219 40559920 ~ 40560297 (-) True G2137139
TU2444165 lncRNA upstream 96186 40571887 ~ 40572198 (-) True G2137144
TU2444203 lncRNA upstream 147858 40623559 ~ 40623874 (-) True G2137179
XM_036966347.1 mRNA downstream 154577 40168411 ~ 40317511 (-) False LOC110508253
XM_036966923.1 mRNA downstream 344887 40115401 ~ 40127201 (-) True LOC110509140
XM_036966544.1 mRNA downstream 368940 39973367 ~ 40103148 (-) False LOC110508256
XM_036966545.1 mRNA downstream 368940 39975514 ~ 40103148 (-) False LOC110508256
XM_036966460.1 mRNA downstream 602152 39843311 ~ 39869936 (-) True ndufv2
XR_005040272.1 mRNA upstream 121559 40597260 ~ 40599320 (-) True LOC118944871
XR_005040257.1 mRNA upstream 129515 40605216 ~ 40608134 (-) True LOC118944865
XM_036966860.1 mRNA upstream 208690 40684391 ~ 40739695 (-) False zfyve9a
XM_036966858.1 mRNA upstream 208690 40684391 ~ 40739696 (-) False zfyve9a
XM_036966861.1 mRNA upstream 208690 40684391 ~ 40739696 (-) False zfyve9a
TU2444084 other downstream 56548 40415303 ~ 40415540 (-) True G2137086
TU2442992 other downstream 350189 40051639 ~ 40121899 (-) True G2136243
TU2442946 other downstream 475042 39990563 ~ 39997046 (-) True LOC110508256
TU2442908 other downstream 526254 39943153 ~ 39945834 (-) True G2136189
TU2442821 other downstream 642909 39803795 ~ 39829179 (-) True LOC110509145
TU2444510 other upstream 785099 41260800 ~ 41261271 (-) True G2137419
TU2444707 other upstream 1154960 41630661 ~ 41631383 (-) False LOC110509166
TU2444670 other upstream 1256013 41731714 ~ 41736389 (-) True G2137555
TU2444782 other upstream 1335094 41810795 ~ 41814201 (-) True G2137648
TU2444984 other upstream 1745221 42220922 ~ 42226364 (-) False G2137814

Expression Profile


TU2444112 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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TU2444112 Expression in each Bioproject

Bar chart with 20 bars.
TU2444112 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.