RNA id: TCONS_00057353


Basic Information

Item Value
RNA id TCONS_00057353
length 452
lncRNA type sense_over
GC content 0.34
exon number 2
gene id XLOC_028784
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 23768478 ~ 23873924 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTTAAAACAACGCACTTTAGAgtaatttgttttagttttttacaaaataataatgatttaacaGTTATAGCTGGTATTAAGTAATTTAATCTGGTCTAACTGATGTCTCAACCAAGCATTAGTTTTaagtcattatttttttcataatagaGCATAGTAGTAGAGGCATAGTAGTTTGCTTAGAAGCTGTTGGGGGAAGTGTGATGATAActgatagttgttgtttttacccagttcacctacagcACTCGGTAATGTCAAAGTTATCAAGATGGATGGCCAATCAAATTGAAGCAAGCGAGGTTTGCGGTTCAGAGGGCGAACCTGAGAATGCAGAAACCACAAGTCACCATGAAAAAGATGCTTTCTTCTTCAGTTAAATGGTGAGTTACATACTTTTATGCTTAGCTTCCCTTAATTGTGAATTATTATATGATCCTAAATAGTATGC

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048513 animal organ development biological_process
GO:0007275 multicellular organism development biological_process
GO:1902667 regulation of axon guidance biological_process
GO:0051239 regulation of multicellular organismal process biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0050793 regulation of developmental process biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0045664 regulation of neuron differentiation biological_process
GO:0060284 regulation of cell development biological_process
GO:0051960 regulation of nervous system development biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057352 lncRNA downstream 558237 23204622 ~ 23210241 (-) True XLOC_028778
TCONS_00058206 lncRNA downstream 558431 23160015 ~ 23210047 (-) False XLOC_028778
TCONS_00058205 lncRNA downstream 642838 23119419 ~ 23125640 (-) True XLOC_028777
TCONS_00055772 lncRNA downstream 644968 23119419 ~ 23123510 (-) False XLOC_028777
TCONS_00058204 lncRNA downstream 1476725 22282725 ~ 22291753 (-) True XLOC_028768
TCONS_00058207 lncRNA upstream 482277 24253766 ~ 24269283 (-) False XLOC_028786
TCONS_00058208 lncRNA upstream 482277 24253766 ~ 24309850 (-) False XLOC_028786
TCONS_00058209 lncRNA upstream 482277 24253766 ~ 24376025 (-) True XLOC_028786
TCONS_00058210 lncRNA upstream 729640 24501129 ~ 24618981 (-) False XLOC_028787
TCONS_00058211 lncRNA upstream 729640 24501129 ~ 24619003 (-) False XLOC_028787
TCONS_00055779 mRNA downstream 9265 23743676 ~ 23759213 (-) False XLOC_028783
TCONS_00055778 mRNA downstream 9286 23740655 ~ 23759192 (-) False XLOC_028783
TCONS_00055775 mRNA downstream 125206 23440404 ~ 23643272 (-) False XLOC_028781
TCONS_00055777 mRNA downstream 125206 23455598 ~ 23643272 (-) True XLOC_028781
TCONS_00055770 mRNA downstream 685291 22755465 ~ 23083187 (-) False XLOC_028776
TCONS_00055782 mRNA upstream 1125 23772614 ~ 23873924 (-) False XLOC_028784
TCONS_00055783 mRNA upstream 4467 23775956 ~ 23839789 (-) True XLOC_028784
TCONS_00055784 mRNA upstream 115237 23886726 ~ 23963838 (-) False XLOC_028785
TCONS_00055785 mRNA upstream 115237 23886726 ~ 23963840 (-) False XLOC_028785
TCONS_00055786 mRNA upstream 115237 23886726 ~ 24019711 (-) False XLOC_028785
TCONS_00055780 other downstream 14207 23746043 ~ 23754271 (-) True XLOC_028783
TCONS_00055776 other downstream 316547 23451817 ~ 23451931 (-) True XLOC_028782
TCONS_00055774 other downstream 349023 23419320 ~ 23419455 (-) True XLOC_028780
TCONS_00055773 other downstream 541629 23226733 ~ 23226849 (-) True XLOC_028779
TCONS_00055755 other downstream 1531184 22236358 ~ 22237294 (-) True XLOC_028767
TCONS_00055802 other upstream 1702717 25474206 ~ 25478995 (-) False XLOC_028796
TCONS_00055813 other upstream 2069297 25840786 ~ 25840902 (-) True XLOC_028802
TCONS_00055827 other upstream 2635657 26407146 ~ 26407263 (-) True XLOC_028811
TCONS_00055829 other upstream 3316882 27088371 ~ 27099285 (-) True XLOC_028815
TCONS_00055832 other upstream 3369690 27141179 ~ 27141303 (-) True XLOC_028817