RNA id: TCONS_00005274


Basic Information

Item Value
RNA id TCONS_00005274
length 568
RNA type mRNA
GC content 0.42
exon number 4
gene id XLOC_002846
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 29731060 ~ 29733194 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTGGAAGAGAGAAGGAGTCTCAATTCTAGAGGACGAAAGACACTCATTCAGTGACAGAAACCAAACTCTACACATCAGCAACATCAGCAGCTCAGATTACAGCACATACAGCTGCATCGTGTCCAATGAAAATGGACAATCTGAAATGCACATAAACATCACCAGTGAGAACTCCACTATTAACCAAGAAAATACTCCTAGTGGTAAAAGACAAATGGTTCAGATTGTGTTTACTAGTGGACTTATGTTTATGGGTGTTTTGGGACTGTGCGTTGTCTTCTACTGCCTTCACAAACATCACCACATGGATGCTGACAAACTCTATGGAACTAATCAGAAAGCAGGTGACCCAGAAGAGATGACCACACTCTCGTACGTCTACACAGACTTCATTAAGTCAAGAGTTTCCAGTCAGGCCTGCTGTGGGGACTTCAGTTACTCTAAGTTTGGACCTACATGCAGCGAGGAAACGATTGTTCTGTATTTGGCCAATAATGAAGAGATACGTGAGAACAAAAACAGAGCATCGATGTAGGTACTGTTCACAAACAAACAACCGATAGGAC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000149252

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006075 lncRNA downstream 239973 29266270 ~ 29491087 (-) True XLOC_002843
TCONS_00005269 lncRNA downstream 593056 29128202 ~ 29138004 (-) True XLOC_002841
TCONS_00006074 lncRNA downstream 1266034 28460213 ~ 28465026 (-) True XLOC_002834
TCONS_00005770 lncRNA downstream 1312881 28417651 ~ 28418179 (-) True XLOC_002830
TCONS_00006073 lncRNA downstream 1345491 28382085 ~ 28385569 (-) True XLOC_002828
TCONS_00005294 lncRNA upstream 1529658 31262852 ~ 31294777 (-) False XLOC_002858
TCONS_00006076 lncRNA upstream 1529658 31262852 ~ 31295006 (-) True XLOC_002858
TCONS_00006077 lncRNA upstream 2344617 32077811 ~ 32084121 (-) False XLOC_002862
TCONS_00006078 lncRNA upstream 2344617 32077811 ~ 32084624 (-) True XLOC_002862
TCONS_00006079 lncRNA upstream 2483219 32216413 ~ 32250771 (-) False XLOC_002863
TCONS_00005272 mRNA downstream 458303 29269998 ~ 29272757 (-) False XLOC_002844
TCONS_00005271 mRNA downstream 458303 29269998 ~ 29272757 (-) True XLOC_002844
TCONS_00005270 mRNA downstream 494200 29226180 ~ 29236860 (-) True XLOC_002842
TCONS_00005268 mRNA downstream 610525 29113437 ~ 29120535 (-) True XLOC_002840
TCONS_00005267 mRNA downstream 610545 29112756 ~ 29120515 (-) False XLOC_002840
TCONS_00005275 mRNA upstream 2706 29735900 ~ 29744921 (-) False XLOC_002847
TCONS_00005277 mRNA upstream 17835 29751029 ~ 29768556 (-) True XLOC_002848
TCONS_00005278 mRNA upstream 60623 29793817 ~ 29809105 (-) True XLOC_002849
TCONS_00005279 mRNA upstream 82450 29815644 ~ 29816467 (-) True XLOC_002850
TCONS_00005280 mRNA upstream 86978 29820172 ~ 29831944 (-) False XLOC_002851
TCONS_00005273 other downstream 22878 29708068 ~ 29708182 (-) True XLOC_002845
TCONS_00005263 other downstream 807427 28923517 ~ 28923633 (-) True XLOC_002838
TCONS_00005262 other downstream 808809 28922135 ~ 28922251 (-) True XLOC_002837
TCONS_00005252 other downstream 1275889 28454500 ~ 28455171 (-) True XLOC_002833
TCONS_00005251 other downstream 1282192 28447906 ~ 28448868 (-) True XLOC_002832
TCONS_00005276 other upstream 2992 29736186 ~ 29739108 (-) True XLOC_002847
TCONS_00005286 other upstream 797949 30531143 ~ 30531257 (-) True XLOC_002854
TCONS_00005293 other upstream 1288162 31021356 ~ 31104754 (-) True XLOC_002857
TCONS_00005308 other upstream 2809342 32542536 ~ 32610769 (-) False XLOC_002866
TCONS_00005309 other upstream 2834430 32567624 ~ 32610694 (-) True XLOC_002866

Expression Profile

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